D. rerio Gene: opa1 - ENSDARG00000070801 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070801
Nameopa1
Descriptionoptic atrophy 1 (autosomal dominant) [Source:ZFIN;Acc:ZDB-GENE-041114-7]
OrganismDanio rerio (zebrafish)
Synonym(s)fk62d06, wu:fb77a10, wu:fk62d06, zgc:92092

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
92.92378
  • 92.92378
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.16873
  • 92.16873
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
91.66535
  • 91.66535
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
90.07994
  • 90.07994
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.26e3
  • 3.26e3
  • 7.23e3
  • 9.32e3
88.98214
  • 88.98214
  • 75.57400
  • 68.49179
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
3.52e3
  • 3.52e3
  • 8.03e3
  • 1.48e4
88.10239
  • 88.10239
  • 72.86144
  • 49.94254
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
3.67e3
  • 3.67e3
  • 4.53e3
  • 6.87e3
  • 7.62e3
  • 9.46e3
  • 9.65e3
  • 9.70e3
  • 1.32e4
  • 1.32e4
  • 1.34e4
87.60408
  • 87.60408
  • 84.69778
  • 76.76981
  • 74.23825
  • 68.01276
  • 67.38022
  • 67.20261
  • 55.43150
  • 55.36633
  • 54.63333
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.87067
  • 86.87067
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.12e3
  • 4.12e3
  • 4.35e3
86.08949
  • 86.08949
  • 85.30073
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
4.23e3
  • 4.23e3
  • 4.74e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.38e3
  • 5.55e3
  • 5.66e3
  • 5.76e3
  • 5.92e3
  • 5.99e3
  • 6.09e3
  • 6.17e3
  • 6.17e3
  • 6.97e3
  • 7.08e3
  • 7.43e3
  • 7.89e3
  • 7.89e3
  • 8.22e3
  • 1.05e4
  • 1.06e4
  • 1.22e4
  • 1.24e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.26e4
  • 1.46e4
85.71042
  • 85.71042
  • 83.98393
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.81481
  • 81.24324
  • 80.88404
  • 80.54711
  • 79.99324
  • 79.74975
  • 79.40400
  • 79.16161
  • 79.16161
  • 76.46045
  • 76.08482
  • 74.90153
  • 73.32320
  • 73.32320
  • 72.22011
  • 64.60472
  • 64.03773
  • 58.68285
  • 57.99244
  • 57.85327
  • 57.79998
  • 57.63244
  • 57.35176
  • 50.60365
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.28e3
  • 4.28e3
85.54070
  • 85.54070
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.61e3
  • 4.61e3
  • 5.95e3
  • 6.34e3
84.42925
  • 84.42925
  • 79.90671
  • 78.57354
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.69375
  • 83.69375
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.23560
  • 83.23560
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.60327
  • 82.60327
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.40121
  • 82.40121
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.31e3
  • 5.31e3
82.05939
  • 82.05939
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.55e3
  • 5.55e3
81.24482
  • 81.24482
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.74798
  • 80.74798
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.78e3
  • 5.78e3
80.46747
  • 80.46747
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.30e3
  • 6.30e3
78.72678
  • 78.72678
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.38e3
  • 6.38e3
78.43273
  • 78.43273
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.53e3
  • 6.53e3
77.93872
  • 77.93872
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.75e3
  • 6.75e3
  • 7.67e3
77.17704
  • 77.17704
  • 74.09372
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
8.69e3
  • 8.69e3
  • 8.88e3
  • 1.35e4
70.62809
  • 70.62809
  • 69.97377
  • 54.54075
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.00e4
  • 1.00e4
66.07618
  • 66.07618
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
65.26602
  • 65.26602
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.04e4
  • 1.04e4
64.77507
  • 64.77507
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.12e4
  • 1.12e4
62.10451
  • 62.10451
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.16e4
  • 1.16e4
60.77863
  • 60.77863
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC085633
EnsemblENSDARG00000070801 (opa1)
Uniprot/SWISSPROTOPA1_DANRE, Q5U3A7
ZFINZDB-GENE-041114-7 (opa1)

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