Gene: si:ch211-156l18.6 - ENSDARG00000070812 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000070812
Name	si:ch211-156l18.6
Description	si:ch211-156l18.6 [Source:ZFIN;Acc:ZDB-GENE-141222-85]
Organism	Danio rerio (zebrafish)
Paralog(s)	17 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.23e3 2.23e3	92.52 92.52	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 1 stage UBERON:0000068embryo stage	1.50e4 1.50e4	49.80 49.80	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.07e4 2.07e4	30.66 30.66	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.12e4 2.12e4	29.02 29.02	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage ZFS:0000036Larval:Day 4	2.15e4 2.15e4	27.87 27.87	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.18e4 2.18e4	27.14 27.14	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.21e4 2.21e4	25.96 25.96	AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage	2.27e4 2.27e4 2.36e4 2.67e4	24.14 24.14 21.14 10.51	AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.36e4 2.36e4	20.88 20.88	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Clupeocephala	17 genes ENSDARG00000056907 si:rp71-45g20.10 ENSDARG00000056917 si:rp71-45g20.4 ENSDARG00000087708 zgc:174353 ENSDARG00000088009 si:dkey-27d5.6 ENSDARG00000088166 zgc:174354 ENSDARG00000088552 si:dkey-23f9.13 ENSDARG00000090104 zgc:174353 ENSDARG00000090197 zgc:174355 ENSDARG00000092054 si:dkey-23f9.8 ENSDARG00000092839 si:dkey-23f9.9 ENSDARG00000094113 si:dkey-23f9.6 ENSDARG00000094196 si:dkey-27d5.10 ENSDARG00000094291 si:rp71-45g20.11 ENSDARG00000094335 si:dkey-23f9.12 ENSDARG00000095364 si:dkey-23f9.7 ENSDARG00000100754 CABZ01022569.1 ENSDARG00000104763 CR450764.1	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000070812.

Cross-references

Ensembl	ENSDARG00000070812 (si:ch211-156l18.6)
ZFIN	ZDB-GENE-141222-85 (si:ch211-156l18.6)
EMBL	BX469912
Uniprot/SPTREMBL	E7F162, E7F162_DANRE, E9QC66, E9QC66_DANRE