D. rerio Gene: pax7b - ENSDARG00000070818 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070818
Namepax7b
Descriptionpaired box 7b [Source:ZFIN;Acc:ZDB-GENE-080917-54]
OrganismDanio rerio (zebrafish)
Orthologs(s)14 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
  • 1.49e4
  • 1.97e4
75.08
  • 75.08
  • 50.00
  • 33.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
8.71e3
  • 8.71e3
  • 9.18e3
  • 9.30e3
  • 9.49e3
  • 1.04e4
  • 1.18e4
  • 1.40e4
  • 1.47e4
  • 1.50e4
  • 1.50e4
70.84
  • 70.84
  • 69.28
  • 68.86
  • 68.22
  • 65.24
  • 60.35
  • 53.15
  • 50.68
  • 49.92
  • 49.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.33e3
  • 9.33e3
  • 1.21e4
68.76
  • 68.76
  • 59.56
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.06e4
  • 1.16e4
  • 1.29e4
  • 1.42e4
  • 1.44e4
  • 1.46e4
  • 1.47e4
  • 1.50e4
64.93
  • 64.93
  • 64.73
  • 64.61
  • 61.02
  • 56.90
  • 52.30
  • 51.79
  • 51.26
  • 50.94
  • 49.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.28e4
  • 1.31e4
62.56
  • 62.56
  • 57.08
  • 56.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
60.40
  • 60.40
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.03
  • 60.03
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.95
  • 57.95
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.94
  • 56.94
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
  • 1.39e4
  • 1.66e4
56.22
  • 56.22
  • 53.41
  • 44.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
CL:0000430xanthophore cell
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003083trunk neural crest
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007036hindbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
CL:0000147pigment cell
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.23
  • 45.23
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.69e4
  • 1.69e4
43.39
  • 43.39
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.17
  • 43.17
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.78
  • 42.78
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.72e4
  • 1.72e4
42.48
  • 42.48
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.75e4
  • 1.75e4
  • 1.83e4
41.42
  • 41.42
  • 38.87
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.27
  • 29.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000070818.

Cross-references

EnsemblENSDARG00000070818 (pax7b)
ZFINZDB-GENE-080917-54 (pax7b)
Uniprot/SPTREMBLC0M005, C0M005_DANRE

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