Gene: bpgm - ENSDARG00000070826 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000070826
Name	bpgm
Description	2,3-bisphosphoglycerate mutase [Source:ZFIN;Acc:ZDB-GENE-040718-375]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:92230
Orthologs(s)	19 orthologs
Paralog(s)	3 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.27e3 2.27e3	92.39 92.39	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	2.61e3 2.61e3 8.05e3	91.28 91.28 73.03	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	3.03e3 3.03e3	89.86 89.86	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	3.31e3 3.31e3	88.93 88.93	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	3.37e3 3.37e3 7.99e3	88.70 88.70 73.26	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	4.03e3 4.03e3	86.49 86.49	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	4.40e3 4.40e3	85.27 85.27	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	5.68e3 5.68e3	80.99 80.99	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	5.72e3 5.72e3	80.84 80.84	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage	5.76e3 5.76e3 8.46e3 1.10e4 1.22e4 1.27e4	80.72 80.72 71.69 63.24 59.13 57.38	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	5.90e3 5.90e3	80.24 80.24	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	6.13e3 6.13e3	79.48 79.48	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	6.32e3 6.32e3	78.85 78.85	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	7.03e3 7.03e3 9.22e3	76.46 76.46 69.13	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	7.14e3 7.14e3	76.11 76.11	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.91e3 7.91e3	73.52 73.52	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	7.97e3 7.97e3 1.27e4	73.31 73.31 57.44	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	8.14e3 8.14e3	72.76 72.76	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	9.16e3 9.16e3	69.32 69.32	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	9.75e3 9.75e3	67.35 67.35	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.20e4 1.20e4	59.87 59.87	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.31e4 1.31e4	56.10 56.10	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.32e4 1.32e4	55.82 55.82	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	1.41e4 1.41e4 1.75e4	52.76 52.76 41.50	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.46e4 1.46e4	50.97 50.97	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000172331 BPGM ENSMUSG00000038871 Bpgm ENSPTRG00000019720 BPGM ENSGGOG00000007525 BPGM ENSMMUG00000004598 BPGM ENSRNOG00000010133 Bpgm ENSBTAG00000008895 ENSBTAG00000037625 ENSECAG00000000655 BPGM ENSOCUG00000003144 BPGM ENSCAFG00000003165 BPGM ENSFCAG00000023812 BPGM ENSCPOG00000000423 BPGM ENSEEUG00000010859 BPGM ENSMODG00000014127 BPGM ENSOANG00000011484 BPGM ENSGALG00000013069 BPGM ENSACAG00000011974 BPGM ENSXETG00000023616 bpgm	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000070826.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Opisthokonta	3 genes ENSDARG00000005423 pgam1a ENSDARG00000014068 pgam1b ENSDARG00000057571 pgam2	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000070826.

Cross-references

Ensembl	ENSDARG00000070826 (bpgm)
ZFIN	ZDB-GENE-040718-375 (bpgm)
EMBL	BC075949, CR387984
Uniprot/SPTREMBL	Q6DHM0, Q6DHM0_DANRE