D. rerio Gene: tnnc2 - ENSDARG00000070835 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070835
Nametnnc2
Descriptiontroponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
OrganismDanio rerio (zebrafish)
Synonym(s)fstnc, tnnc, tnnc {eco:0000313|embl:aaf78473.1,gn eco:0000313|zfin:zdb-gene-000322-2}, wu:fb39a12
Orthologs(s)15 orthologs
Paralog(s)49 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • ZFS:0000022Gastrula:Bud
4.31
  • 4.31
  • 17.2
  • 18.3
  • 72.4
  • 92.6
  • 92.6
  • 225
  • 4.08e3
  • 8.46e3
  • 1.19e4
  • 1.23e4
  • 1.38e4
  • 1.49e4
  • 1.50e4
99.99
  • 99.99
  • 99.95
  • 99.94
  • 99.76
  • 99.69
  • 99.69
  • 99.25
  • 86.34
  • 71.66
  • 60.28
  • 58.98
  • 53.85
  • 49.95
  • 49.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
20.0
  • 20.0
99.94
  • 99.94
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
22.0
  • 22.0
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
24.3
  • 24.3
  • 50.2
  • 94.9
99.92
  • 99.92
  • 99.84
  • 99.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
27.7
  • 27.7
99.91
  • 99.91
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
32.0
  • 32.0
  • 52.0
  • 56.9
  • 130
  • 161
  • 199
  • 262
  • 983
  • 3.98e3
  • 8.14e3
99.90
  • 99.90
  • 99.83
  • 99.81
  • 99.57
  • 99.46
  • 99.34
  • 99.13
  • 96.71
  • 86.69
  • 72.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
41.7
  • 41.7
99.86
  • 99.86
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
156
  • 156
  • 1.25e3
99.48
  • 99.48
  • 95.82
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
195
  • 195
99.35
  • 99.35
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
222
  • 222
99.26
  • 99.26
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
452
  • 452
  • 9.20e3
  • 1.19e4
98.49
  • 98.49
  • 69.21
  • 60.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
626
  • 626
97.91
  • 97.91
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
  • 1.26e4
94.98
  • 94.98
  • 57.67
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.00e3
  • 2.00e3
93.29
  • 93.29
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
2.34e3
  • 2.34e3
92.17
  • 92.17
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
91.54
  • 91.54
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
84.01
  • 84.01
AEIR
  • AEIR
CL:0000190fast muscle cell
  • ZFS:0000029Pharyngula:Prim-5
8.30e3
  • 8.30e3
72.22
  • 72.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
71.78
  • 71.78
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
9.15e3
  • 9.15e3
  • 1.75e4
69.35
  • 69.35
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.95e3
  • 9.95e3
66.69
  • 66.69
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.16e4
  • 1.16e4
61.21
  • 61.21
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.23e4
  • 1.23e4
58.90
  • 58.90
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
58.12
  • 58.12
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.46
  • 53.46
AEIR
  • AEIR
UBERON:0014892skeletal muscle organ
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.19
  • 35.19
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.24
  • 23.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Eukaryota49 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000070835.

Cross-references

EnsemblENSDARG00000070835 (tnnc2)
ZFINZDB-GENE-000322-2 (tnnc2)
EMBLAF180890, BC064284, BC152238, BC154312, CR749762
Uniprot/SPTREMBLE9QBF1, E9QBF1_DANRE, Q9I8U8, Q9I8U8_DANRE

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