D. rerio Gene: sox2 - ENSDARG00000070913 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070913
Namesox2
DescriptionSRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
OrganismDanio rerio (zebrafish)
Synonym(s)cb236, soxp, wu:fb83g04, wu:fc14d07, zgc:65860, zgc:77389

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
887
  • 887
  • 1.46e3
  • 6.16e3
  • 1.04e4
  • 1.29e4
97.03392
  • 97.03392
  • 95.10160
  • 79.37531
  • 65.19395
  • 56.64826
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
  • 9.96e3
  • 1.24e4
  • 1.37e4
  • 1.46e4
96.05492
  • 96.05492
  • 66.65328
  • 58.32830
  • 54.15159
  • 51.25717
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.44e3
  • 1.44e3
  • 1.55e3
  • 1.93e3
  • 1.98e3
  • 2.15e3
  • 2.18e3
  • 2.25e3
  • 2.67e3
  • 2.76e3
  • 3.16e3
95.17888
  • 95.17888
  • 94.81509
  • 93.53357
  • 93.35968
  • 92.81629
  • 92.70509
  • 92.45444
  • 91.05190
  • 90.75830
  • 89.43696
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
  • 1.76e3
  • 1.82e3
  • 1.85e3
  • 1.93e3
  • 1.93e3
  • 1.94e3
  • 1.94e3
  • 2.20e3
  • 2.23e3
  • 2.76e3
  • 4.59e3
  • 4.67e3
  • 8.41e3
  • 1.41e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
94.28226
  • 94.28226
  • 94.12166
  • 93.90383
  • 93.80618
  • 93.54131
  • 93.53451
  • 93.49807
  • 93.49536
  • 92.64394
  • 92.54455
  • 90.77095
  • 84.61715
  • 84.37665
  • 71.84901
  • 52.86415
  • 49.99498
  • 49.94977
  • 49.81080
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.73e3
  • 1.73e3
  • 1.78e3
  • 2.39e3
  • 2.55e3
  • 2.62e3
  • 3.80e3
94.19372
  • 94.19372
  • 94.03978
  • 91.99602
  • 91.47249
  • 91.21964
  • 87.29418
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
  • 1.27e4
93.67723
  • 93.67723
  • 57.51934
AEIR
  • AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
2.13e3
  • 2.13e3
92.85882
  • 92.85882
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
2.49e3
  • 2.49e3
  • 1.03e4
91.66835
  • 91.66835
  • 65.37290
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000104life cycle
2.60e3
  • 2.60e3
  • 2.99e3
  • 3.73e3
  • 5.97e3
  • 6.79e3
  • 8.96e3
  • 1.19e4
  • 1.22e4
  • 1.49e4
  • 1.49e4
91.29990
  • 91.29990
  • 90.00000
  • 87.49935
  • 80.00000
  • 77.26769
  • 69.99330
  • 59.99665
  • 59.07919
  • 49.99665
  • 49.94307
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.66e3
  • 2.66e3
91.10913
  • 91.10913
AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000019Gastrula:Shield
2.99e3
  • 2.99e3
90.00167
  • 90.00167
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
3.02e3
  • 3.02e3
  • 3.21e3
  • 4.85e3
89.90266
  • 89.90266
  • 89.24549
  • 83.77856
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.20e3
  • 3.20e3
  • 3.98e3
89.28403
  • 89.28403
  • 86.66333
AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
3.73e3
  • 3.73e3
  • 5.50e3
  • 5.81e3
  • 8.54e3
  • 1.05e4
87.50166
  • 87.50166
  • 81.57057
  • 80.54720
  • 71.41181
  • 64.68915
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
3.73e3
  • 3.73e3
87.49998
  • 87.49998
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
3.73e3
  • 3.73e3
87.49998
  • 87.49998
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
3.93e3
  • 3.93e3
  • 7.97e3
  • 8.54e3
  • 9.19e3
  • 1.10e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
86.83709
  • 86.83709
  • 73.32328
  • 71.41181
  • 69.22071
  • 63.13780
  • 57.67723
  • 57.67723
  • 57.67723
  • 57.67723
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
4.27e3
  • 4.27e3
  • 8.65e3
  • 8.96e3
  • 9.60e3
  • 1.07e4
  • 1.28e4
85.71095
  • 85.71095
  • 71.03757
  • 69.98828
  • 67.84543
  • 64.27231
  • 57.13616
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.98e3
  • 4.98e3
  • 7.47e3
  • 9.96e3
  • 1.24e4
83.33165
  • 83.33165
  • 75.00167
  • 66.66333
  • 58.32830
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
5.50e3
  • 5.50e3
  • 8.09e3
  • 8.65e3
  • 1.08e4
  • 1.42e4
81.57057
  • 81.57057
  • 72.89824
  • 71.03757
  • 63.87048
  • 52.60480
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
5.81e3
  • 5.81e3
  • 8.54e3
  • 8.96e3
  • 9.34e3
  • 1.10e4
  • 1.12e4
  • 1.19e4
  • 1.19e4
  • 1.32e4
80.54720
  • 80.54720
  • 71.41181
  • 69.98326
  • 68.73660
  • 63.31825
  • 62.49329
  • 59.99665
  • 59.98995
  • 55.86060
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
5.98e3
  • 5.98e3
  • 9.67e3
  • 9.96e3
  • 1.10e4
  • 1.19e4
  • 1.28e4
  • 1.33e4
  • 1.38e4
79.99330
  • 79.99330
  • 67.63199
  • 66.66668
  • 63.31825
  • 59.99665
  • 57.13616
  • 55.53213
  • 53.82942
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
5.98e3
  • 5.98e3
  • 8.96e3
  • 1.04e4
  • 1.12e4
79.98995
  • 79.98995
  • 69.98326
  • 65.19395
  • 62.47822
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
6.15e3
  • 6.15e3
  • 1.12e4
79.40341
  • 79.40341
  • 62.49831
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.25e3
  • 6.25e3
79.08616
  • 79.08616
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
6.72e3
  • 6.72e3
  • 7.80e3
  • 9.25e3
  • 1.05e4
  • 1.05e4
  • 1.05e4
  • 1.07e4
  • 1.28e4
77.48826
  • 77.48826
  • 73.89629
  • 69.02920
  • 64.99163
  • 64.97991
  • 64.97991
  • 64.25557
  • 57.12611
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000031neuroblast
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.49e4
75.00167
  • 75.00167
  • 50.00167
AEIR
  • AEIR
  • AEIR
CL:0000047neuronal stem cell
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00167
  • 75.00167
  • 50.00167
  • 50.00167
  • 50.00167
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007284presumptive neural plate
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
7.47e3
  • 7.47e3
  • 9.96e3
75.00167
  • 75.00167
  • 66.66668
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00000
  • 75.00000
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 9.33e3
  • 9.60e3
  • 1.07e4
  • 1.24e4
75.00000
  • 75.00000
  • 68.74497
  • 67.84543
  • 64.28068
  • 58.31993
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 9.29e3
  • 1.24e4
74.99665
  • 74.99665
  • 68.89807
  • 58.32830
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 8.71e3
  • 1.07e4
  • 1.49e4
74.99498
  • 74.99498
  • 70.82497
  • 64.27231
  • 49.98995
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000021Gastrula:90%-epiboly
7.47e3
  • 7.47e3
  • 9.19e3
  • 9.19e3
  • 1.49e4
74.99163
  • 74.99163
  • 69.22071
  • 69.22071
  • 49.99833
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
7.97e3
  • 7.97e3
  • 8.15e3
  • 9.71e3
  • 1.04e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
73.30988
  • 73.30988
  • 72.71054
  • 67.48157
  • 65.19395
  • 64.97991
  • 64.28068
  • 64.26394
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
8.30e3
  • 8.30e3
  • 9.75e3
  • 1.04e4
  • 1.09e4
  • 1.18e4
72.20882
  • 72.20882
  • 67.36955
  • 65.19395
  • 63.61293
  • 60.38821
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.30e3
  • 8.30e3
  • 1.33e4
72.20882
  • 72.20882
  • 55.53213
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
8.54e3
  • 8.54e3
  • 9.51e3
  • 1.02e4
  • 1.02e4
  • 1.12e4
  • 1.12e4
  • 1.24e4
  • 1.34e4
71.40512
  • 71.40512
  • 68.16174
  • 65.88732
  • 65.77105
  • 62.47822
  • 62.47822
  • 58.32830
  • 54.98828
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.71e3
  • 8.71e3
  • 8.71e3
70.82497
  • 70.82497
  • 70.82497
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.96e3
  • 8.96e3
70.00971
  • 70.00971
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
9.44e3
  • 9.44e3
  • 1.12e4
  • 1.49e4
68.40431
  • 68.40431
  • 62.48826
  • 50.00167
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.60e3
  • 9.60e3
  • 1.03e4
  • 1.12e4
67.84543
  • 67.84543
  • 65.37290
  • 62.48826
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.92e3
  • 9.92e3
66.77524
  • 66.77524
AEIR
  • AEIR
UBERON:0002212macula of saccule of membranous labyrinth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
66.66668
  • 66.66668
  • 50.00167
  • 50.00167
  • 50.00167
  • 50.00167
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002214macula of utricle of membranous labyrinth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
66.66668
  • 66.66668
  • 50.00167
  • 50.00167
  • 50.00167
  • 50.00167
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002424oral epithelium
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
9.96e3
  • 9.96e3
  • 1.49e4
66.66668
  • 66.66668
  • 50.00167
AEIR
  • AEIR
  • AEIR
UBERON:0003056pre-chordal neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
9.96e3
  • 9.96e3
  • 1.49e4
66.66668
  • 66.66668
  • 49.99833
AEIR
  • AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
9.96e3
  • 9.96e3
  • 1.49e4
66.66668
  • 66.66668
  • 49.99833
AEIR
  • AEIR
  • AEIR
UBERON:2000168anterior macula
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.66668
  • 66.66668
AEIR
  • AEIR
UBERON:2000558posterior macula
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.66668
  • 66.66668
AEIR
  • AEIR
UBERON:0006601presumptive ectoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
9.96e3
  • 9.96e3
  • 1.19e4
66.65998
  • 66.65998
  • 59.98995
AEIR
  • AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
66.65663
  • 66.65663
AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
66.65663
  • 66.65663
  • 66.65663
  • 66.65663
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 1.05e4
  • 1.08e4
  • 1.12e4
66.64659
  • 66.64659
  • 64.68915
  • 63.87048
  • 62.48324
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.03e4
  • 1.03e4
65.67860
  • 65.67860
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.03e4
  • 1.03e4
  • 1.05e4
65.60992
  • 65.60992
  • 64.68915
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.24e4
65.29133
  • 65.29133
  • 58.59810
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.23e4
64.28068
  • 64.28068
  • 58.80344
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
  • 1.08e4
63.87048
  • 63.87048
  • 63.87048
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
  • 1.31e4
58.31156
  • 58.31156
  • 56.22992
AEIR
  • AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.31e4
  • 1.31e4
  • 1.49e4
56.24164
  • 56.24164
  • 49.99330
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.31e4
  • 1.31e4
  • 1.41e4
56.22992
  • 56.22992
  • 52.91772
AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
55.54552
  • 55.54552
AEIR
  • AEIR
UBERON:0006238future brain
  • ZFS:0000020Gastrula:75%-epiboly
1.34e4
  • 1.34e4
54.98828
  • 54.98828
AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000030Pharyngula:Prim-15
1.36e4
  • 1.36e4
54.53206
  • 54.53206
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.08700
  • 54.08700
AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
1.38e4
  • 1.38e4
53.82942
  • 53.82942
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
53.55303
  • 53.55303
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.06379
  • 51.06379
AEIR
  • AEIR
CL:0000117CNS neuron (sensu Vertebrata)
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
CL:0000852neuromast support cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
CL:0005014auditory epithelial support cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00167
  • 50.00167
  • 50.00167
  • 49.99498
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
UBERON:0003076posterior neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
ZFA:0001098immature hair cell anterior macula (Danio)
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
ZFA:0001099immature hair cell posterior macula (Danio)
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
UBERON:0007290presumptive rhombomere 3
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00000
  • 50.00000
  • 49.99833
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
49.99833
  • 49.99833
  • 49.98493
  • 49.98326
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000228lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99665
  • 49.99665
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.51e4
  • 1.51e4
49.51679
  • 49.51679
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.01765
  • 42.01765
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.76e4
  • 1.76e4
41.15866
  • 41.15866
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAB242329, BC056743, BC065656
EnsemblENSDARG00000070913 (sox2)
Uniprot/SWISSPROTQ6P0E1, SOX2_DANRE
ZFINZDB-GENE-030909-1 (sox2)

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