D. rerio Gene: sox2 - ENSDARG00000070913 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070913
Namesox2
DescriptionSRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
OrganismDanio rerio (zebrafish)
Synonym(s)cb236, soxp, wu:fb83g04, wu:fc14d07, zgc:65860, zgc:77389

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
880
  • 880
  • 1.45e3
  • 1.03e4
  • 1.28e4
97.02760
  • 97.02760
  • 95.09103
  • 65.19372
  • 56.64807
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
  • 9.87e3
  • 1.23e4
  • 1.36e4
  • 1.44e4
96.05494
  • 96.05494
  • 66.65314
  • 58.32826
  • 54.15145
  • 51.25665
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.41e3
  • 1.41e3
  • 1.44e3
  • 1.55e3
  • 1.98e3
  • 2.13e3
  • 2.16e3
  • 2.24e3
  • 2.65e3
  • 2.74e3
  • 3.16e3
95.25459
  • 95.25459
  • 95.14442
  • 94.77564
  • 93.29762
  • 92.80074
  • 92.68930
  • 92.43811
  • 91.03253
  • 90.73831
  • 89.33798
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
  • 1.74e3
  • 1.81e3
  • 1.84e3
  • 1.92e3
  • 1.92e3
  • 1.93e3
  • 1.93e3
  • 2.18e3
  • 2.21e3
  • 2.74e3
  • 4.55e3
  • 4.63e3
  • 8.35e3
  • 1.39e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
94.27013
  • 94.27013
  • 94.10893
  • 93.89062
  • 93.79277
  • 93.52732
  • 93.52053
  • 93.48401
  • 93.48140
  • 92.62803
  • 92.52839
  • 90.75097
  • 84.61656
  • 84.34281
  • 71.78798
  • 52.86343
  • 49.99493
  • 49.94930
  • 49.80903
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.72e3
  • 1.72e3
  • 1.74e3
  • 1.77e3
  • 2.37e3
  • 3.77e3
94.18116
  • 94.18116
  • 94.12330
  • 94.02687
  • 91.97867
  • 87.26666
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
  • 1.27e4
93.61834
  • 93.61834
  • 57.12234
AEIR
  • AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
2.11e3
  • 2.11e3
92.85884
  • 92.85884
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
2.47e3
  • 2.47e3
  • 1.02e4
91.66836
  • 91.66836
  • 65.37279
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000104life cycle
2.58e3
  • 2.58e3
  • 2.96e3
  • 4.42e3
  • 5.92e3
  • 6.73e3
  • 8.88e3
  • 1.18e4
  • 1.21e4
  • 1.48e4
  • 1.48e4
91.28105
  • 91.28105
  • 90.00000
  • 85.07610
  • 80.00000
  • 77.26767
  • 69.99324
  • 59.99662
  • 59.07907
  • 49.99662
  • 49.94254
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.64e3
  • 2.64e3
91.08989
  • 91.08989
AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000019Gastrula:Shield
2.96e3
  • 2.96e3
90.00169
  • 90.00169
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.17e3
  • 3.17e3
  • 3.95e3
89.28403
  • 89.28403
  • 86.66328
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.19e3
  • 3.19e3
  • 3.31e3
  • 4.37e3
89.22221
  • 89.22221
  • 88.81189
  • 85.21751
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
3.70e3
  • 3.70e3
  • 5.45e3
  • 5.76e3
  • 8.46e3
  • 1.04e4
87.50170
  • 87.50170
  • 81.57051
  • 80.54711
  • 71.41166
  • 64.68900
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
3.70e3
  • 3.70e3
87.50001
  • 87.50001
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
3.70e3
  • 3.70e3
87.50001
  • 87.50001
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
3.90e3
  • 3.90e3
  • 7.89e3
  • 8.46e3
  • 9.11e3
  • 1.09e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
86.83704
  • 86.83704
  • 73.32320
  • 71.41166
  • 69.22062
  • 63.13761
  • 57.67708
  • 57.67708
  • 57.67708
  • 57.67708
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
4.23e3
  • 4.23e3
  • 8.57e3
  • 8.88e3
  • 9.51e3
  • 1.06e4
  • 1.27e4
85.71092
  • 85.71092
  • 71.03743
  • 69.98817
  • 67.84530
  • 64.27218
  • 57.13609
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.93e3
  • 4.93e3
  • 7.40e3
  • 9.86e3
  • 1.23e4
83.33165
  • 83.33165
  • 75.00167
  • 66.66328
  • 58.32826
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
5.45e3
  • 5.45e3
  • 8.02e3
  • 8.57e3
  • 1.07e4
  • 1.40e4
81.57051
  • 81.57051
  • 72.89808
  • 71.03743
  • 63.87031
  • 52.60453
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
5.76e3
  • 5.76e3
  • 8.46e3
  • 8.88e3
  • 9.25e3
  • 1.09e4
  • 1.11e4
  • 1.18e4
  • 1.18e4
  • 1.31e4
80.54711
  • 80.54711
  • 71.41166
  • 69.98310
  • 68.73648
  • 63.31813
  • 62.49323
  • 59.99662
  • 59.98986
  • 55.86038
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
5.92e3
  • 5.92e3
  • 9.58e3
  • 9.86e3
  • 1.09e4
  • 1.18e4
  • 1.27e4
  • 1.32e4
  • 1.37e4
79.99324
  • 79.99324
  • 67.63186
  • 66.66666
  • 63.31813
  • 59.99662
  • 57.13609
  • 55.53188
  • 53.82925
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
5.92e3
  • 5.92e3
  • 8.88e3
  • 1.03e4
  • 1.11e4
79.98986
  • 79.98986
  • 69.98310
  • 65.19372
  • 62.47802
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
6.09e3
  • 6.09e3
  • 1.11e4
79.40331
  • 79.40331
  • 62.49830
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.20e3
  • 6.20e3
79.04083
  • 79.04083
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
6.66e3
  • 6.66e3
  • 7.72e3
  • 9.16e3
  • 1.04e4
  • 1.04e4
  • 1.04e4
  • 1.06e4
  • 1.27e4
77.48818
  • 77.48818
  • 73.89614
  • 69.02902
  • 64.99153
  • 64.97970
  • 64.97970
  • 64.25529
  • 57.12595
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000031neuroblast
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
7.40e3
  • 7.40e3
  • 1.48e4
75.00167
  • 75.00167
  • 50.00169
AEIR
  • AEIR
  • AEIR
CL:0000047neuronal stem cell
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
7.40e3
  • 7.40e3
  • 1.48e4
  • 1.48e4
  • 1.48e4
75.00167
  • 75.00167
  • 50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007284presumptive neural plate
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
7.40e3
  • 7.40e3
  • 9.86e3
75.00167
  • 75.00167
  • 66.66666
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000036Larval:Day 4
7.40e3
  • 7.40e3
74.99998
  • 74.99998
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
7.40e3
  • 7.40e3
  • 9.25e3
  • 9.51e3
  • 1.06e4
  • 1.23e4
74.99998
  • 74.99998
  • 68.74493
  • 67.84530
  • 64.28063
  • 58.31981
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.40e3
  • 7.40e3
  • 1.23e4
74.99660
  • 74.99660
  • 58.32826
AEIR
  • AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
7.40e3
  • 7.40e3
  • 8.63e3
  • 1.06e4
  • 1.48e4
74.99491
  • 74.99491
  • 70.82487
  • 64.27218
  • 49.98986
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000021Gastrula:90%-epiboly
7.40e3
  • 7.40e3
  • 9.11e3
  • 9.11e3
  • 1.48e4
74.99153
  • 74.99153
  • 69.22062
  • 69.22062
  • 49.99831
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
7.90e3
  • 7.90e3
  • 8.08e3
  • 9.62e3
  • 1.03e4
  • 1.04e4
  • 1.06e4
  • 1.06e4
73.30969
  • 73.30969
  • 72.71036
  • 67.48142
  • 65.19372
  • 64.97970
  • 64.28063
  • 64.26374
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
8.22e3
  • 8.22e3
  • 9.66e3
  • 1.03e4
  • 1.08e4
  • 1.17e4
72.20871
  • 72.20871
  • 67.36934
  • 65.19372
  • 63.61269
  • 60.38795
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.22e3
  • 8.22e3
  • 1.32e4
72.20871
  • 72.20871
  • 55.53188
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
8.46e3
  • 8.46e3
  • 9.42e3
  • 1.01e4
  • 1.01e4
  • 1.11e4
  • 1.11e4
  • 1.23e4
  • 1.33e4
71.40490
  • 71.40490
  • 68.16153
  • 65.88711
  • 65.77088
  • 62.47802
  • 62.47802
  • 58.32826
  • 54.98815
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.63e3
  • 8.63e3
  • 8.63e3
70.82487
  • 70.82487
  • 70.82487
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.96e3
  • 8.96e3
69.72944
  • 69.72944
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
9.35e3
  • 9.35e3
  • 1.11e4
  • 1.48e4
68.40414
  • 68.40414
  • 62.48816
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.51e3
  • 9.51e3
  • 1.02e4
  • 1.11e4
67.84530
  • 67.84530
  • 65.37279
  • 62.48816
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.85e3
  • 9.85e3
66.70324
  • 66.70324
AEIR
  • AEIR
UBERON:0002212macula of saccule of membranous labyrinth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
9.86e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
66.66666
  • 66.66666
  • 50.00169
  • 50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002214macula of utricle of membranous labyrinth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
9.86e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
66.66666
  • 66.66666
  • 50.00169
  • 50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002424oral epithelium
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
9.86e3
  • 9.86e3
  • 1.48e4
66.66666
  • 66.66666
  • 50.00169
AEIR
  • AEIR
  • AEIR
UBERON:0003056pre-chordal neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
9.86e3
  • 9.86e3
  • 1.48e4
66.66666
  • 66.66666
  • 49.99831
AEIR
  • AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
9.86e3
  • 9.86e3
  • 1.48e4
66.66666
  • 66.66666
  • 49.99831
AEIR
  • AEIR
  • AEIR
UBERON:2000168anterior macula
  • ZFS:0000029Pharyngula:Prim-5
9.86e3
  • 9.86e3
66.66666
  • 66.66666
AEIR
  • AEIR
UBERON:2000558posterior macula
  • ZFS:0000029Pharyngula:Prim-5
9.86e3
  • 9.86e3
66.66666
  • 66.66666
AEIR
  • AEIR
UBERON:0006601presumptive ectoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
9.87e3
  • 9.87e3
  • 1.18e4
66.65990
  • 66.65990
  • 59.98986
AEIR
  • AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000022Gastrula:Bud
9.87e3
  • 9.87e3
66.65652
  • 66.65652
AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.87e3
  • 9.87e3
  • 9.87e3
  • 9.87e3
66.65652
  • 66.65652
  • 66.65652
  • 66.65652
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
9.87e3
  • 9.87e3
  • 1.04e4
  • 1.07e4
  • 1.11e4
66.64638
  • 66.64638
  • 64.68900
  • 63.87031
  • 62.48309
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
  • 1.04e4
65.60979
  • 65.60979
  • 64.68900
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.02e4
  • 1.02e4
65.60421
  • 65.60421
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
  • 1.23e4
65.21611
  • 65.21611
  • 58.50836
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.06e4
  • 1.06e4
  • 1.22e4
64.28063
  • 64.28063
  • 58.80324
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.07e4
63.87031
  • 63.87031
  • 63.87031
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.23e4
  • 1.23e4
  • 1.30e4
58.31136
  • 58.31136
  • 56.22973
AEIR
  • AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.29e4
  • 1.29e4
  • 1.48e4
56.24156
  • 56.24156
  • 49.99324
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.30e4
  • 1.30e4
  • 1.39e4
56.22973
  • 56.22973
  • 52.91751
AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
55.54540
  • 55.54540
AEIR
  • AEIR
UBERON:0006238future brain
  • ZFS:0000020Gastrula:75%-epiboly
1.33e4
  • 1.33e4
54.98815
  • 54.98815
AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000030Pharyngula:Prim-15
1.35e4
  • 1.35e4
54.53193
  • 54.53193
AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
1.37e4
  • 1.37e4
53.82925
  • 53.82925
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
53.65792
  • 53.65792
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
53.55284
  • 53.55284
AEIR
  • AEIR
CL:0000117CNS neuron (sensu Vertebrata)
  • ZFS:0000023Segmentation:1-4 somites
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
CL:0000852neuromast support cell
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
CL:0005014auditory epithelial support cell
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
50.00169
  • 50.00169
  • 50.00169
  • 49.99493
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0003076posterior neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
ZFA:0001098immature hair cell anterior macula (Danio)
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
ZFA:0001099immature hair cell posterior macula (Danio)
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0007290presumptive rhombomere 3
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
  • 1.48e4
50.00000
  • 50.00000
  • 49.99831
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
49.99831
  • 49.99831
  • 49.98479
  • 49.98310
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000228lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
49.99662
  • 49.99662
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
49.91391
  • 49.91391
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAB242329, BC056743, BC065656
EnsemblENSDARG00000070913 (sox2)
Uniprot/SWISSPROTQ6P0E1, SOX2_DANRE
ZFINZDB-GENE-030909-1 (sox2)

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