D. rerio Gene: hcrt - ENSDARG00000070932 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070932
Namehcrt
Descriptionhypocretin (orexin) neuropeptide precursor [Source:ZFIN;Acc:ZDB-GENE-040324-1]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001898hypothalamus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000038Larval:Day 6
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
4.98e3
  • 4.98e3
  • 7.47e3
  • 9.96e3
  • 1.05e4
  • 1.22e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
83.33
  • 83.33
  • 74.99
  • 66.67
  • 64.99
  • 59.08
  • 50.00
  • 49.99
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0005778hypocretin-secreting neuron (Danio)
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
9.68e3
  • 9.68e3
  • 1.40e4
67.59
  • 67.59
  • 53.10
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.19e4
  • 1.19e4
  • 1.56e4
60.26
  • 60.26
  • 47.81
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
  • 1.34e4
  • 1.53e4
59.99
  • 59.99
  • 54.99
  • 48.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
  • 1.85e4
  • 2.06e4
  • 2.08e4
  • 2.28e4
58.35
  • 58.35
  • 38.01
  • 31.13
  • 30.41
  • 23.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.29e4
  • 1.29e4
56.89
  • 56.89
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.37e4
  • 1.37e4
54.04
  • 54.04
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.76
  • 51.76
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.48e4
  • 1.48e4
  • 1.60e4
50.56
  • 50.56
  • 46.34
AEIR
  • AEIR
  • AEIR
UBERON:0001937lateral hypothalamic nucleus
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.54e4
  • 1.54e4
48.30
  • 48.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.53
  • 42.53
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.86
  • 34.86
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.98
  • 23.98
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.38e4
  • 2.38e4
20.30
  • 20.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000070932 (hcrt)
ZFINZDB-GENE-040324-1 (hcrt)
EMBLBX005093
Uniprot/SPTREMBLF1QMC8, F1QMC8_DANRE

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