D. rerio Gene: cdk5r2a - ENSDARG00000071011 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071011
Namecdk5r2a
Descriptioncyclin-dependent kinase 5, regulatory subunit 2a (p39) [Source:ZFIN;Acc:ZDB-GENE-050417-22]
OrganismDanio rerio (zebrafish)
Synonym(s)cdk5r2, fj48b05, p39, wu:fj48b05, zgc:110126, zgc:110126gn
Orthologs(s)10 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
  • 5.26e3
96.32
  • 96.32
  • 82.40
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.17e3
  • 1.17e3
  • 1.18e4
  • 1.45e4
96.10
  • 96.10
  • 60.49
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.05e3
  • 2.05e3
  • 6.42e3
  • 1.13e4
93.13
  • 93.13
  • 78.49
  • 62.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
2.15e3
  • 2.15e3
  • 4.74e3
  • 7.52e3
  • 8.66e3
  • 1.22e4
  • 1.46e4
  • 1.47e4
  • 1.50e4
  • 1.79e4
92.82
  • 92.82
  • 84.14
  • 74.82
  • 71.01
  • 59.28
  • 51.26
  • 50.90
  • 49.80
  • 40.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
2.57e3
  • 2.57e3
  • 4.83e3
  • 7.47e3
  • 1.37e4
  • 1.46e4
  • 1.48e4
  • 1.52e4
91.41
  • 91.41
  • 83.83
  • 75.00
  • 54.22
  • 51.21
  • 50.48
  • 49.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
2.81e3
  • 2.81e3
  • 3.23e3
  • 5.70e3
90.59
  • 90.59
  • 89.18
  • 80.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
66.55
  • 66.55
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
63.96
  • 63.96
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
  • 2.22e4
42.29
  • 42.29
  • 25.56
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.61e4
  • 2.61e4
12.57
  • 12.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000071011.

Cross-references

EnsemblENSDARG00000071011 (cdk5r2a)
ZFINZDB-GENE-050417-22 (cdk5r2a)
EMBLBC092745, CU929360
Uniprot/SPTREMBLQ568S1, Q568S1_DANRE

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