D. rerio Gene: snx1a - ENSDARG00000071031 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071031
Namesnx1a
Descriptionsorting nexin 1a [Source:ZFIN;Acc:ZDB-GENE-060302-3]
OrganismDanio rerio (zebrafish)
Synonym(s)d254, sb:cb923, snx1, wu:fb40c08, wu:fj65g09

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
692
  • 692
97.69
  • 97.69
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
711
  • 711
97.62
  • 97.62
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
791
  • 791
97.35
  • 97.35
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
816
  • 816
97.27
  • 97.27
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
828
  • 828
97.23
  • 97.23
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
933
  • 933
  • 1.57e3
96.88
  • 96.88
  • 94.74
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
935
  • 935
96.87
  • 96.87
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.55
  • 96.55
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.48
  • 96.48
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000109gastrula stage
1.07e3
  • 1.07e3
  • 1.59e3
  • 1.67e3
  • 1.73e3
  • 1.74e3
  • 1.78e3
  • 1.95e3
  • 2.22e3
  • 3.62e3
  • 4.84e3
  • 7.19e3
  • 7.80e3
  • 8.02e3
  • 9.76e3
  • 1.29e4
  • 1.38e4
  • 1.45e4
  • 1.49e4
96.43
  • 96.43
  • 94.70
  • 94.41
  • 94.20
  • 94.18
  • 94.05
  • 93.46
  • 92.57
  • 87.88
  • 83.81
  • 75.93
  • 73.90
  • 73.16
  • 67.31
  • 56.79
  • 53.84
  • 51.56
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.16e3
  • 1.16e3
96.14
  • 96.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.16e3
  • 1.16e3
96.13
  • 96.13
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.26e3
  • 1.26e3
95.77
  • 95.77
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.27e3
  • 1.27e3
  • 1.46e3
  • 1.64e3
  • 7.10e3
  • 1.05e4
95.75
  • 95.75
  • 95.11
  • 94.52
  • 76.23
  • 64.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.28e3
  • 1.28e3
  • 1.30e3
  • 1.62e3
  • 1.63e3
  • 1.83e3
  • 2.10e3
  • 2.28e3
  • 2.78e3
  • 4.22e3
  • 5.89e3
95.73
  • 95.73
  • 95.64
  • 94.56
  • 94.54
  • 93.88
  • 92.99
  • 92.38
  • 90.68
  • 85.87
  • 80.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.44e3
  • 1.44e3
95.18
  • 95.18
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.47e3
  • 1.47e3
95.10
  • 95.10
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
95.06
  • 95.06
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.53e3
  • 1.53e3
94.87
  • 94.87
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.60e3
  • 1.60e3
  • 1.61e3
  • 1.84e3
94.66
  • 94.66
  • 94.62
  • 93.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.67e3
  • 1.67e3
  • 1.28e4
94.42
  • 94.42
  • 57.13
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.71e3
  • 1.71e3
  • 3.65e3
  • 4.50e3
  • 8.02e3
94.27
  • 94.27
  • 87.79
  • 84.95
  • 73.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.00e3
  • 2.00e3
  • 2.10e3
93.29
  • 93.29
  • 92.98
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
  • 3.78e3
92.87
  • 92.87
  • 87.35
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
91.99
  • 91.99
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.57e3
  • 2.57e3
  • 3.78e3
91.40
  • 91.40
  • 87.36
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.62e3
  • 2.62e3
91.24
  • 91.24
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.03e3
  • 3.03e3
89.85
  • 89.85
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.30e3
  • 3.30e3
88.94
  • 88.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0001637artery
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 4.98e3
  • 5.75e3
83.33
  • 83.33
  • 83.33
  • 80.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001638vein
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.75e3
  • 5.75e3
  • 5.75e3
  • 6.97e3
80.76
  • 80.76
  • 80.76
  • 76.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
6.33e3
  • 6.33e3
  • 7.04e3
  • 8.09e3
  • 8.96e3
  • 9.21e3
  • 1.23e4
78.81
  • 78.81
  • 76.42
  • 72.92
  • 70.01
  • 69.17
  • 58.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.97e3
  • 7.97e3
  • 7.97e3
  • 7.97e3
73.32
  • 73.32
  • 73.32
  • 73.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:2001073axial vasculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.24e4
  • 1.24e4
  • 1.24e4
  • 1.49e4
  • 1.49e4
58.33
  • 58.33
  • 58.33
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.26e4
  • 1.26e4
  • 1.37e4
57.68
  • 57.68
  • 54.15
AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.34e4
  • 1.34e4
  • 1.41e4
55.24
  • 55.24
  • 52.92
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000071031 (snx1a)
ZFINZDB-GENE-060302-3 (snx1a)
EMBLAL929134
Uniprot/SPTREMBLF1Q9I7, F1Q9I7_DANRE

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