D. rerio Gene: si:ch211-117c9.5 - ENSDARG00000071235 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071235
Namesi:ch211-117c9.5
Descriptionsi:ch211-117c9.5 [Source:ZFIN;Acc:ZDB-GENE-110408-2]
OrganismDanio rerio (zebrafish)
Orthologs(s)3 orthologs
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.93e3
  • 1.93e3
  • 5.04e3
  • 6.41e3
  • 8.23e3
93.53
  • 93.53
  • 83.14
  • 78.55
  • 72.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.62
  • 91.62
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.61e3
  • 4.61e3
  • 9.03e3
84.56
  • 84.56
  • 69.77
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.70e3
  • 4.70e3
  • 9.42e3
84.25
  • 84.25
  • 68.46
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
  • 1.30e4
83.07
  • 83.07
  • 56.47
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.12e3
  • 5.12e3
  • 7.32e3
  • 7.56e3
82.87
  • 82.87
  • 75.50
  • 74.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.47e3
  • 5.47e3
81.69
  • 81.69
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
6.45e3
  • 6.45e3
  • 9.02e3
  • 9.14e3
  • 1.46e4
  • 1.48e4
  • 1.49e4
  • 1.68e4
  • 1.78e4
78.39
  • 78.39
  • 69.80
  • 69.40
  • 51.16
  • 50.60
  • 50.00
  • 43.84
  • 40.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
6.75e3
  • 6.75e3
  • 1.08e4
  • 1.10e4
  • 1.19e4
  • 1.30e4
  • 1.43e4
  • 1.44e4
  • 1.45e4
  • 1.47e4
77.41
  • 77.41
  • 63.99
  • 63.05
  • 60.13
  • 56.54
  • 51.98
  • 51.63
  • 51.28
  • 50.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.57e3
  • 8.57e3
71.29
  • 71.29
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.24
  • 60.24
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.42
  • 59.42
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.22e4
  • 1.22e4
  • 1.29e4
  • 1.69e4
59.24
  • 59.24
  • 56.97
  • 43.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.43e4
  • 1.43e4
52.14
  • 52.14
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.96
  • 46.96
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.95
  • 46.95
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.78
  • 45.78
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.52
  • 45.52
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.17
  • 45.17
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.62
  • 43.62
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.77
  • 42.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.50
  • 40.50
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.03
  • 40.03
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.59
  • 36.59
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.67
  • 35.67
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.87
  • 34.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000071235.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia7 genesCompare expression
Bilateria11 genesCompare expression
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071235.

Cross-references

EnsemblENSDARG00000071235 (si:ch211-117c9.5)
ZFINZDB-GENE-110408-2 (si:ch211-117c9.5)
EMBLBX005466
Uniprot/SPTREMBLE7EXM3, E7EXM3_DANRE, F8W3V0, F8W3V0_DANRE

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