D. rerio Gene: ryr3 - ENSDARG00000071331 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071331
Nameryr3
Descriptionryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-189g6.1
Orthologs(s)22 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
360
  • 360
98.80
  • 98.80
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
410
  • 410
98.63
  • 98.63
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
666
  • 666
97.77
  • 97.77
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.41e3
  • 1.41e3
  • 2.89e3
  • 6.37e3
  • 1.22e4
  • 1.64e4
95.29
  • 95.29
  • 90.34
  • 78.68
  • 59.30
  • 44.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
4.01e3
  • 4.01e3
  • 6.79e3
  • 6.79e3
  • 1.16e4
  • 1.21e4
  • 1.23e4
86.58
  • 86.58
  • 77.27
  • 77.27
  • 61.09
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.22e3
  • 4.22e3
  • 1.52e4
85.87
  • 85.87
  • 49.12
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.34e3
  • 5.34e3
  • 7.01e3
82.13
  • 82.13
  • 76.53
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.00e3
  • 6.00e3
79.90
  • 79.90
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.12e3
  • 6.12e3
  • 9.42e3
79.52
  • 79.52
  • 68.45
AEIR
  • AEIR
  • AEIR
UBERON:0001904habenula
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 7.47e3
  • 9.96e3
75.00
  • 75.00
  • 75.00
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 1.08e4
  • 1.12e4
75.00
  • 75.00
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000190fast muscle cell
  • ZFS:0000029Pharyngula:Prim-5
8.30e3
  • 8.30e3
72.22
  • 72.22
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.05e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
  • 1.17e4
  • 1.20e4
64.98
  • 64.98
  • 64.26
  • 64.26
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.64
  • 64.64
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.59
  • 63.59
AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.21e4
  • 1.21e4
62.48
  • 62.48
  • 62.48
  • 61.34
  • 59.36
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.44
  • 59.44
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
1.25e4
  • 1.25e4
  • 1.31e4
  • 1.31e4
58.30
  • 58.30
  • 56.24
  • 56.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000024Segmentation:5-9 somites
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000030Pharyngula:Prim-15
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.30
  • 50.30
AEIR
  • AEIR
ZFA:0001373migratory slow muscle precursor cell (Danio)
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0001086muscle pioneer (Danio)
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.08
  • 45.08
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.00
  • 41.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000071331.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071331.

Cross-references

EnsemblENSDARG00000071331 (ryr3)
ZFINZDB-GENE-041001-165 (ryr3)
EMBLBX248136, BX682544, CR628343
Uniprot/SPTREMBLQ5RGQ4, Q5RGQ4_DANRE

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