D. rerio Gene: gbx1 - ENSDARG00000071418 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071418
Namegbx1
Descriptiongastrulation brain homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-020117-2]
OrganismDanio rerio (zebrafish)
Synonym(s)cb619, fj77a06, wu:fj77a06
Orthologs(s)12 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000530primary neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
2.99e3
  • 2.99e3
  • 2.99e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
90.00
  • 90.00
  • 90.00
  • 83.34
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.15e3
  • 3.15e3
  • 5.50e3
  • 5.60e3
  • 5.81e3
89.47
  • 89.47
  • 81.57
  • 81.24
  • 80.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
3.28e3
  • 3.28e3
  • 3.34e3
  • 3.99e3
  • 5.16e3
  • 7.04e3
  • 7.94e3
89.01
  • 89.01
  • 88.83
  • 86.63
  • 82.72
  • 76.42
  • 73.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
3.56e3
  • 3.56e3
  • 3.70e3
  • 3.71e3
  • 4.21e3
  • 8.60e3
  • 9.17e3
  • 9.54e3
  • 9.59e3
  • 1.00e4
  • 1.14e4
  • 1.17e4
  • 1.31e4
88.10
  • 88.10
  • 87.60
  • 87.59
  • 85.92
  • 71.20
  • 69.30
  • 68.05
  • 67.88
  • 66.41
  • 61.79
  • 60.80
  • 56.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
3.74e3
  • 3.74e3
  • 4.98e3
  • 5.20e3
  • 5.98e3
  • 5.98e3
  • 6.29e3
  • 8.01e3
  • 8.96e3
  • 9.25e3
87.49
  • 87.49
  • 83.34
  • 82.60
  • 79.99
  • 79.99
  • 78.94
  • 73.19
  • 69.98
  • 69.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
4.98e3
  • 4.98e3
  • 9.96e3
83.34
  • 83.34
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0007277presumptive hindbrain
  • ZFS:0000020Gastrula:75%-epiboly
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000026Segmentation:14-19 somites
4.98e3
  • 4.98e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.98e3
  • 4.98e3
  • 5.34e3
83.33
  • 83.33
  • 82.14
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 6.64e3
  • 7.47e3
  • 8.79e3
  • 9.13e3
  • 9.13e3
  • 1.08e4
83.32
  • 83.32
  • 77.77
  • 74.99
  • 70.57
  • 69.43
  • 69.43
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.27e3
  • 5.27e3
  • 5.50e3
  • 6.11e3
  • 6.11e3
  • 9.61e3
  • 9.71e3
  • 9.71e3
82.35
  • 82.35
  • 81.57
  • 79.53
  • 79.53
  • 67.83
  • 67.48
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.81e3
  • 5.81e3
  • 6.15e3
80.55
  • 80.55
  • 79.40
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.98e3
  • 5.98e3
  • 9.10e3
  • 9.71e3
  • 9.71e3
79.99
  • 79.99
  • 69.55
  • 67.48
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.40e3
  • 6.40e3
  • 6.97e3
78.56
  • 78.56
  • 76.66
AEIR
  • AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 9.19e3
  • 9.19e3
74.99
  • 74.99
  • 69.22
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
8.50e3
  • 8.50e3
  • 9.11e3
71.53
  • 71.53
  • 69.50
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
8.61e3
  • 8.61e3
  • 8.91e3
  • 9.48e3
  • 1.02e4
  • 1.06e4
  • 1.07e4
  • 1.15e4
  • 1.22e4
  • 1.22e4
  • 1.56e4
71.16
  • 71.16
  • 70.17
  • 68.27
  • 65.81
  • 64.50
  • 64.24
  • 61.59
  • 59.26
  • 59.19
  • 47.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000016Blastula:30%-epiboly
9.33e3
  • 9.33e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
9.33e3
  • 9.33e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.54e3
  • 9.54e3
68.05
  • 68.05
AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.07e4
66.65
  • 66.65
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
9.96e3
  • 9.96e3
  • 1.10e4
  • 1.10e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
66.65
  • 66.65
  • 63.14
  • 63.14
  • 59.98
  • 57.68
  • 57.68
  • 57.68
  • 57.68
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.57e4
65.23
  • 65.23
  • 47.55
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.20
  • 61.20
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
61.18
  • 61.18
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.17e4
  • 1.17e4
60.93
  • 60.93
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
59.44
  • 59.44
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.25e4
  • 1.25e4
  • 1.30e4
  • 1.34e4
58.07
  • 58.07
  • 56.33
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000017Gastrula:50%-epiboly
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.42e4
  • 1.42e4
52.58
  • 52.58
AEIR
  • AEIR
UBERON:0007289presumptive rhombomere 1
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007296presumptive rhombomere 2
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007290presumptive rhombomere 3
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007284presumptive neural plate
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.33
  • 48.33
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.50
  • 40.50
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.08
  • 39.08
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.52
  • 29.52
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.11e4
  • 2.11e4
29.32
  • 29.32
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.17
  • 29.17
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.48e4
  • 2.48e4
17.09
  • 17.09
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.48e4
  • 2.48e4
16.86
  • 16.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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