D. rerio Gene: fhl1a - ENSDARG00000071498 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071498
Namefhl1a
Descriptionfour and a half LIM domains 1a [Source:ZFIN;Acc:ZDB-GENE-040206-1]
OrganismDanio rerio (zebrafish)
Synonym(s)fhl, fhla, fhla {eco:0000313|embl:aah72725.1,gn eco:0000313|zfin:zdb-gene-040206-1}, zgc:92025
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
230
  • 230
  • 448
  • 6.97e3
  • 7.86e3
  • 1.28e4
99.23
  • 99.23
  • 98.50
  • 76.66
  • 73.67
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
283
  • 283
99.06
  • 99.06
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
95.35
  • 95.35
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
93.83
  • 93.83
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.10e3
  • 2.10e3
  • 1.34e4
92.98
  • 92.98
  • 55.11
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.26
  • 92.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
90.32
  • 90.32
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.13e3
  • 4.13e3
  • 1.23e4
86.17
  • 86.17
  • 58.84
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.53
  • 85.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
85.16
  • 85.16
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
5.60e3
  • 5.60e3
  • 8.79e3
  • 9.13e3
  • 9.96e3
81.24
  • 81.24
  • 70.57
  • 69.43
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.66e3
  • 5.66e3
81.04
  • 81.04
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
5.81e3
  • 5.81e3
  • 6.72e3
  • 1.05e4
80.55
  • 80.55
  • 77.49
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.98e3
  • 5.98e3
79.99
  • 79.99
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
6.45e3
  • 6.45e3
  • 1.30e4
  • 1.42e4
  • 1.50e4
78.40
  • 78.40
  • 56.38
  • 52.43
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
6.89e3
  • 6.89e3
  • 6.97e3
  • 8.30e3
76.92
  • 76.92
  • 76.66
  • 72.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
  • 8.96e3
  • 1.05e4
  • 1.05e4
  • 1.07e4
  • 1.56e4
75.00
  • 75.00
  • 70.00
  • 64.99
  • 64.99
  • 64.28
  • 47.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.96e3
75.00
  • 75.00
  • 75.00
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.79e3
  • 8.79e3
70.56
  • 70.56
AEIR
  • AEIR
UBERON:0004152bulbus arteriosus
  • ZFS:0000033Hatching:Long-pec
8.96e3
  • 8.96e3
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0008229craniocervical region musculature
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
8.96e3
  • 8.96e3
  • 9.33e3
  • 1.19e4
69.99
  • 69.99
  • 68.74
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
9.02e3
  • 9.02e3
  • 9.99e3
  • 1.07e4
  • 1.13e4
  • 1.78e4
69.81
  • 69.81
  • 66.55
  • 64.03
  • 62.19
  • 40.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.03e4
66.65
  • 66.65
  • 65.61
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
66.54
  • 66.54
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.02e4
  • 1.02e4
  • 1.05e4
  • 1.07e4
65.77
  • 65.77
  • 64.69
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.09e4
  • 1.09e4
  • 1.12e4
63.63
  • 63.63
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.09e4
  • 1.09e4
  • 1.09e4
  • 1.20e4
  • 1.21e4
63.63
  • 63.63
  • 63.63
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.36
  • 58.36
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
  • 1.34e4
  • 1.39e4
56.22
  • 56.22
  • 54.97
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000028Segmentation:26+ somites
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.62
  • 53.62
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.20
  • 51.20
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
  • 1.50e4
50.53
  • 50.53
  • 49.89
AEIR
  • AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000010Blastula:512-cell
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.70e4
  • 1.70e4
43.03
  • 43.03
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.75e4
  • 1.75e4
41.51
  • 41.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eumetazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071498.

Cross-references

EnsemblENSDARG00000071498 (fhl1a)
ZFINZDB-GENE-040206-1 (fhl1a)
EMBLBC072725, BC164059, BX511227
Uniprot/SPTREMBLQ6GQL7, Q6GQL7_DANRE

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