D. rerio Gene: hs6st1b - ENSDARG00000071501 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071501
Namehs6st1b
Descriptionheparan sulfate 6-O-sulfotransferase 1b [Source:ZFIN;Acc:ZDB-GENE-070103-2]
OrganismDanio rerio (zebrafish)
Synonym(s)6-ost-1b
Orthologs(s)21 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
2.96e3
  • 2.96e3
  • 1.63e4
  • 1.77e4
90.11
  • 90.11
  • 45.43
  • 40.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.96e3
  • 5.96e3
  • 1.45e4
80.03
  • 80.03
  • 51.33
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072322 cell stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
6.79e3
  • 6.79e3
  • 1.19e4
  • 1.20e4
  • 1.22e4
  • 1.28e4
  • 1.29e4
  • 1.30e4
  • 1.34e4
  • 1.34e4
  • 1.37e4
  • 1.38e4
  • 1.39e4
  • 1.45e4
  • 1.52e4
  • 1.54e4
77.27
  • 77.27
  • 60.17
  • 59.65
  • 59.14
  • 57.22
  • 56.93
  • 56.46
  • 55.28
  • 55.09
  • 54.24
  • 53.85
  • 53.48
  • 51.38
  • 49.22
  • 48.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.90e3
  • 7.90e3
73.56
  • 73.56
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.35e3
  • 8.35e3
  • 8.46e3
  • 9.75e3
  • 1.03e4
  • 1.04e4
  • 1.04e4
  • 1.10e4
  • 1.16e4
  • 1.23e4
  • 1.72e4
72.05
  • 72.05
  • 71.66
  • 67.35
  • 65.57
  • 65.10
  • 65.07
  • 63.09
  • 61.25
  • 58.65
  • 42.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
8.50e3
  • 8.50e3
  • 1.14e4
  • 1.29e4
  • 1.30e4
  • 1.43e4
  • 1.75e4
71.55
  • 71.55
  • 61.91
  • 56.80
  • 56.51
  • 52.23
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
9.42e3
  • 9.42e3
  • 1.29e4
  • 1.31e4
  • 1.37e4
  • 1.39e4
68.45
  • 68.45
  • 56.79
  • 56.22
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.49e3
  • 9.49e3
  • 1.57e4
68.22
  • 68.22
  • 47.59
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.61e3
  • 9.61e3
67.84
  • 67.84
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.67e3
  • 9.67e3
67.63
  • 67.63
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.34
  • 66.34
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.02e4
  • 1.02e4
  • 1.16e4
  • 1.33e4
65.80
  • 65.80
  • 61.15
  • 55.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.04e4
  • 1.04e4
  • 1.21e4
65.25
  • 65.25
  • 59.32
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
1.09e4
  • 1.09e4
  • 1.33e4
  • 1.34e4
  • 1.52e4
63.38
  • 63.38
  • 55.35
  • 55.20
  • 49.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.37
  • 63.37
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
  • 1.16e4
62.50
  • 62.50
  • 61.09
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.15e4
  • 1.15e4
61.62
  • 61.62
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.19e4
  • 1.19e4
60.17
  • 60.17
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
  • 1.28e4
59.36
  • 59.36
  • 57.13
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.22e4
  • 1.22e4
59.28
  • 59.28
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.11
  • 59.11
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.52
  • 58.52
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.32
  • 57.32
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
  • 1.42e4
57.11
  • 57.11
  • 52.47
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.69
  • 56.69
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.35e4
54.97
  • 54.97
  • 54.96
AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.78
  • 54.78
AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000031Pharyngula:Prim-25
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.54e4
54.35
  • 54.35
  • 48.56
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.01
  • 54.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.04
  • 52.04
AEIR
  • AEIR
UBERON:0007286presumptive floor plate
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.88
  • 49.88
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.73
  • 48.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.56e4
  • 1.56e4
47.88
  • 47.88
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.67
  • 40.67
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.98
  • 28.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi14 species14 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000071501.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071501.

Cross-references

EnsemblENSDARG00000071501 (hs6st1b)
ZFINZDB-GENE-070103-2 (hs6st1b)
EMBLDQ812994
Uniprot/SWISSPROTA0MGZ5, H6S1B_DANRE

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