D. rerio Gene: CCDC71 - ENSDARG00000071570 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071570
NameCCDC71
Descriptionsi:dkeyp-87e7.4 [Source:ZFIN;Acc:ZDB-GENE-030131-6208]
OrganismDanio rerio (zebrafish)
Synonym(s)fi38h02, flj12800, wu:fi38h02, wu:fi39b10

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
  • 2.09e3
  • 5.41e3
  • 6.69e3
94.70
  • 94.70
  • 93.00
  • 81.89
  • 77.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
1.92e3
  • 1.92e3
  • 2.33e3
  • 2.37e3
  • 3.61e3
  • 3.82e3
93.58
  • 93.58
  • 92.20
  • 92.06
  • 87.92
  • 87.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.15e3
  • 2.15e3
92.82
  • 92.82
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.17e3
  • 2.17e3
92.75
  • 92.75
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
92.73
  • 92.73
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
2.22e3
  • 2.22e3
  • 2.23e3
  • 2.32e3
  • 2.45e3
  • 2.76e3
  • 4.28e3
92.57
  • 92.57
  • 92.54
  • 92.22
  • 91.81
  • 90.75
  • 85.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.28e3
  • 2.28e3
92.36
  • 92.36
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
2.75e3
  • 2.75e3
  • 3.43e3
  • 3.69e3
  • 4.05e3
  • 4.07e3
  • 4.15e3
  • 4.97e3
  • 4.98e3
  • 5.26e3
  • 5.67e3
90.79
  • 90.79
  • 88.52
  • 87.64
  • 86.43
  • 86.36
  • 86.11
  • 83.36
  • 83.32
  • 82.39
  • 81.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.20e3
  • 3.20e3
89.30
  • 89.30
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
3.21e3
  • 3.21e3
  • 3.43e3
  • 3.65e3
  • 3.84e3
  • 3.93e3
  • 4.22e3
  • 4.25e3
  • 5.81e3
  • 6.07e3
  • 6.38e3
  • 7.21e3
  • 8.18e3
  • 1.00e4
  • 1.07e4
  • 1.39e4
  • 1.41e4
89.25
  • 89.25
  • 88.52
  • 87.79
  • 87.14
  • 86.83
  • 85.87
  • 85.76
  • 80.55
  • 79.68
  • 78.63
  • 75.86
  • 72.61
  • 66.40
  • 64.04
  • 53.30
  • 52.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
  • 8.91e3
87.68
  • 87.68
  • 70.18
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.93e3
  • 3.93e3
  • 6.28e3
86.83
  • 86.83
  • 78.99
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.01e3
  • 4.01e3
86.59
  • 86.59
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.52e3
  • 4.52e3
84.86
  • 84.86
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
6.00e3
  • 6.00e3
  • 6.73e3
  • 7.90e3
79.92
  • 79.92
  • 77.46
  • 73.54
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.16e3
  • 6.16e3
79.37
  • 79.37
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.30e3
  • 6.30e3
  • 8.80e3
78.89
  • 78.89
  • 70.55
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.55
  • 78.55
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.45e3
  • 6.45e3
  • 6.95e3
78.40
  • 78.40
  • 76.73
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.51e3
  • 6.51e3
78.20
  • 78.20
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.91e3
  • 6.91e3
76.85
  • 76.85
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.11e3
  • 7.11e3
76.20
  • 76.20
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.17e3
  • 7.17e3
75.99
  • 75.99
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.93
  • 75.93
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.34e3
  • 7.34e3
75.43
  • 75.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.45e3
  • 7.45e3
75.06
  • 75.06
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.63e3
  • 7.63e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.83
  • 73.83
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.31e3
  • 8.31e3
72.18
  • 72.18
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
72.13
  • 72.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.02
  • 72.02
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
71.77
  • 71.77
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EnsemblENSDARG00000071570 (CCDC71)
HGNCHGNC:25760 (CCDC71)
ZFINZDB-GENE-030131-6208 (si:dkeyp-87e7.4)
EMBLBX649457
Uniprot/SPTREMBLF1R2Q7, F1R2Q7_DANRE, Q1LVR7, Q1LVR7_DANRE

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