D. rerio Gene: si:ch211-222k6.3 - ENSDARG00000071578 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071578
Namesi:ch211-222k6.3
Descriptionsi:ch211-222k6.3 [Source:ZFIN;Acc:ZDB-GENE-050208-567]
OrganismDanio rerio (zebrafish)
Paralog(s)39 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
86.05
  • 86.05
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.30
  • 80.30
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.89
  • 77.89
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
66.56
  • 66.56
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.04e4
  • 1.04e4
  • 1.17e4
65.31
  • 65.31
  • 60.77
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.06e4
  • 1.06e4
  • 1.20e4
64.50
  • 64.50
  • 59.73
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.84
  • 63.84
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.51
  • 63.51
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.52
  • 58.52
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
  • 1.81e4
58.38
  • 58.38
  • 39.52
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.27e4
  • 1.27e4
  • 1.31e4
  • 1.32e4
  • 1.39e4
  • 1.45e4
57.45
  • 57.45
  • 56.01
  • 55.91
  • 53.44
  • 51.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.23
  • 57.23
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.86
  • 52.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.25
  • 52.25
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.73
  • 50.73
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.59
  • 50.59
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.59e4
  • 1.59e4
46.79
  • 46.79
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.84e4
  • 1.84e4
38.22
  • 38.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi39 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071578.

Cross-references

EnsemblENSDARG00000071578 (si:ch211-222k6.3)
ZFINZDB-GENE-050208-567 (si:ch211-222k6.3)
EMBLBC152512, BX324216
Uniprot/SPTREMBLQ1LXF7, Q1LXF7_DANRE

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