D. rerio Gene: gtf3ab - ENSDARG00000071583 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071583
Namegtf3ab
Descriptiongeneral transcription factor IIIA, b [Source:ZFIN;Acc:ZDB-GENE-030131-7698]
OrganismDanio rerio (zebrafish)
Synonym(s)gtf3a, ns:zf-a141, zgc:162349
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
78.7
  • 78.7
  • 135
  • 208
  • 974
  • 2.45e3
99.74
  • 99.74
  • 99.55
  • 99.31
  • 96.74
  • 91.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
156
  • 156
  • 1.50e4
99.48
  • 99.48
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
345
  • 345
98.85
  • 98.85
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
353
  • 353
98.82
  • 98.82
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
360
  • 360
98.80
  • 98.80
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
690
  • 690
97.69
  • 97.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
820
  • 820
97.26
  • 97.26
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.64e3
  • 1.64e3
94.51
  • 94.51
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000068embryo stage
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000066fully formed stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
1.65e3
  • 1.65e3
  • 6.11e3
  • 1.13e4
  • 1.31e4
  • 1.43e4
  • 1.47e4
  • 1.49e4
  • 1.77e4
  • 1.79e4
94.49
  • 94.49
  • 79.56
  • 62.21
  • 56.29
  • 52.23
  • 50.74
  • 50.25
  • 40.62
  • 40.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
94.43
  • 94.43
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.91e3
  • 1.91e3
  • 7.60e3
  • 9.83e3
  • 1.04e4
  • 1.23e4
  • 1.25e4
93.60
  • 93.60
  • 74.57
  • 67.10
  • 65.09
  • 58.89
  • 58.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
89.26
  • 89.26
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
86.38
  • 86.38
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.96e3
  • 6.96e3
76.71
  • 76.71
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.84
  • 75.84
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
69.30
  • 69.30
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.97
  • 58.97
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.68
  • 53.68
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.56e4
  • 1.56e4
  • 2.02e4
  • 2.05e4
  • 2.24e4
47.89
  • 47.89
  • 32.25
  • 31.20
  • 24.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
1.90e4
  • 1.90e4
36.34
  • 36.34
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.01
  • 32.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
27.88
  • 27.88
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.79
  • 26.79
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.22
  • 25.22
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.34e4
  • 2.34e4
21.56
  • 21.56
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.68e4
  • 2.68e4
10.36
  • 10.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071583.

Cross-references

EnsemblENSDARG00000071583 (gtf3ab)
ZFINZDB-GENE-030131-7698 (gtf3ab)
EMBLBX571696
Uniprot/SPTREMBLF1R8L4, F1R8L4_DANRE

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