D. rerio Gene: si:ch211-236g6.1 - ENSDARG00000071590 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071590
Namesi:ch211-236g6.1
Descriptionsi:ch211-236g6.1 [Source:ZFIN;Acc:ZDB-GENE-050208-448]
OrganismDanio rerio (zebrafish)
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.37e3
  • 9.37e3
68.63
  • 68.63
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.03e4
  • 1.03e4
  • 1.80e4
65.59
  • 65.59
  • 39.82
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.15
  • 65.15
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.17e4
  • 1.17e4
  • 1.17e4
60.96
  • 60.96
  • 60.73
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.47e4
  • 1.47e4
  • 1.50e4
  • 1.55e4
  • 1.65e4
  • 1.94e4
50.82
  • 50.82
  • 49.91
  • 48.07
  • 44.82
  • 35.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.47e4
  • 1.47e4
  • 1.49e4
50.64
  • 50.64
  • 50.27
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.27
  • 50.27
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.96
  • 49.96
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.92
  • 48.92
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.56e4
  • 1.56e4
47.64
  • 47.64
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.58e4
  • 1.58e4
46.96
  • 46.96
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.43
  • 43.43
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
  • 2.00e4
41.52
  • 41.52
  • 33.02
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.47
  • 41.47
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.45
  • 38.45
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.64
  • 31.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071590.

Cross-references

EnsemblENSDARG00000071590 (si:ch211-236g6.1)
ZFINZDB-GENE-050208-448 (si:ch211-236g6.1)
EMBLBX539307, BX649524
Uniprot/SPTREMBLA8WG27, A8WG27_DANRE, Q1LVQ1, Q1LVQ1_DANRE

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