D. rerio Gene: PTGDS (1 to many) - ENSDARG00000071626 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071626
NamePTGDS (1 to many)
Descriptionzgc:153154 [Source:ZFIN;Acc:ZDB-GENE-060825-337]
OrganismDanio rerio (zebrafish)
Synonym(s)id:ibd5130, id:ibd5159, l-pgds, pgds, wu:fb15e12, zgc:158768
Orthologs(s)16 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
69.6
  • 69.6
99.77
  • 99.77
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
189
  • 189
  • 2.69e3
99.37
  • 99.37
  • 91.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
198
  • 198
  • 567
99.34
  • 99.34
  • 98.11
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
390
  • 390
98.70
  • 98.70
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
412
  • 412
  • 652
  • 805
  • 1.71e3
  • 1.82e3
  • 1.89e3
  • 2.64e3
  • 3.16e3
  • 4.03e3
  • 4.68e3
  • 1.32e4
  • 1.32e4
  • 1.33e4
  • 1.37e4
  • 1.45e4
  • 1.46e4
98.62
  • 98.62
  • 97.82
  • 97.31
  • 94.27
  • 93.89
  • 93.68
  • 91.16
  • 89.44
  • 86.52
  • 84.33
  • 55.89
  • 55.70
  • 55.53
  • 54.18
  • 51.51
  • 51.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000031Pharyngula:Prim-25
447
  • 447
  • 1.33e4
  • 1.35e4
98.51
  • 98.51
  • 55.51
  • 54.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
687
  • 687
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.33
  • 95.33
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
1.50e3
  • 1.50e3
  • 1.74e3
  • 9.82e3
  • 1.26e4
  • 1.33e4
  • 1.36e4
  • 1.42e4
  • 1.49e4
  • 1.60e4
  • 1.68e4
94.98
  • 94.98
  • 94.17
  • 67.12
  • 57.78
  • 55.47
  • 54.50
  • 52.31
  • 50.24
  • 46.44
  • 43.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.22
  • 92.22
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
2.34e3
  • 2.34e3
  • 2.36e3
  • 3.27e3
  • 5.45e3
  • 6.27e3
  • 8.28e3
92.16
  • 92.16
  • 92.11
  • 89.06
  • 81.75
  • 79.01
  • 72.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
2.94e3
  • 2.94e3
  • 3.77e3
  • 7.43e3
90.17
  • 90.17
  • 87.38
  • 75.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.10
  • 89.10
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.97e3
  • 4.97e3
83.35
  • 83.35
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.37e3
  • 6.37e3
  • 7.06e3
  • 1.57e4
78.66
  • 78.66
  • 76.36
  • 47.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
75.10
  • 75.10
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.83e3
  • 7.83e3
73.77
  • 73.77
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.85e3
  • 7.85e3
73.71
  • 73.71
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.06e3
  • 8.06e3
73.03
  • 73.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.86
  • 71.86
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
71.11
  • 71.11
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
9.17e3
  • 9.17e3
  • 9.48e3
  • 1.21e4
69.29
  • 69.29
  • 68.26
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.67e3
  • 9.67e3
67.63
  • 67.63
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
1.01e4
  • 1.01e4
  • 1.09e4
  • 1.23e4
  • 1.66e4
66.24
  • 66.24
  • 63.41
  • 58.95
  • 44.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
56.16
  • 56.16
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.45e4
  • 1.45e4
51.44
  • 51.44
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.30
  • 48.30
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.59e4
  • 1.59e4
46.63
  • 46.63
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.78
  • 45.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071626.

Cross-references

EnsemblENSDARG00000071626 (PTGDS (1 to many))
HGNCHGNC:9592 (PTGDS (1 to many))
ZFINZDB-GENE-060825-337 (zgc:153154)
EMBLBX469922
Uniprot/SPTREMBLF1R6B8, F1R6B8_DANRE, F1R6B9, F1R6B9_DANRE

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