D. rerio Gene: loxl5a - ENSDARG00000071680 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071680
Nameloxl5a
Descriptionlysyl oxidase-like 5a [Source:ZFIN;Acc:ZDB-GENE-070705-186]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-63j24.5, si:dkey-49m19.3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002328notochord
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.96
  • 64.96
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.57e4
  • 1.57e4
47.30
  • 47.30
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.60e4
  • 1.60e4
46.42
  • 46.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.12
  • 46.12
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.69e4
  • 1.69e4
  • 1.77e4
43.30
  • 43.30
  • 40.68
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.49
  • 39.49
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.99
  • 37.99
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.69
  • 36.69
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.66
  • 36.66
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.29
  • 33.29
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.22
  • 32.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.10
  • 31.10
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.34e4
  • 2.34e4
  • 2.36e4
21.55
  • 21.55
  • 20.97
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.44e4
  • 2.44e4
18.32
  • 18.32
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000071680 (loxl5a)
ZFINZDB-GENE-070705-186 (loxl5a)
EMBLBX649252, CR936300
Uniprot/SPTREMBLE7F285, E7F285_DANRE, F1REA6, F1REA6_DANRE

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