D. rerio Gene: rx1 - ENSDARG00000071684 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071684
Namerx1
Descriptionretinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309857.22
Orthologs(s)3 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
624
  • 624
  • 1.27e4
  • 1.46e4
  • 1.65e4
97.91
  • 97.91
  • 57.60
  • 51.21
  • 44.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.27e3
  • 2.27e3
92.39
  • 92.39
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
3.73e3
  • 3.73e3
87.50
  • 87.50
AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000043Juvenile:Days 45-89
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
4.27e3
  • 4.27e3
  • 5.97e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
85.71
  • 85.71
  • 80.00
  • 75.00
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
4.73e3
  • 4.73e3
  • 5.35e3
  • 5.55e3
  • 6.44e3
  • 9.76e3
  • 1.06e4
  • 1.10e4
  • 1.23e4
  • 1.65e4
84.16
  • 84.16
  • 82.10
  • 81.43
  • 78.43
  • 67.32
  • 64.41
  • 63.16
  • 58.71
  • 44.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.98e3
  • 4.98e3
  • 1.23e4
  • 1.28e4
  • 1.31e4
83.33
  • 83.33
  • 58.80
  • 57.13
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
6.40e3
  • 6.40e3
  • 1.49e4
78.57
  • 78.57
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000573retinal cone cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000043Juvenile:Days 45-89
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
  • 1.39e4
75.00
  • 75.00
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
7.74e3
  • 7.74e3
  • 1.07e4
  • 1.19e4
  • 1.23e4
  • 1.26e4
  • 1.29e4
  • 1.42e4
  • 1.50e4
  • 1.50e4
  • 1.51e4
  • 1.65e4
74.10
  • 74.10
  • 64.10
  • 60.13
  • 58.75
  • 57.75
  • 56.82
  • 52.39
  • 49.81
  • 49.77
  • 49.35
  • 44.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.13e3
  • 9.71e3
  • 1.08e4
69.99
  • 69.99
  • 69.43
  • 67.48
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.73e3
  • 9.73e3
  • 1.07e4
  • 1.08e4
67.42
  • 67.42
  • 64.06
  • 63.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.09e4
  • 1.09e4
63.63
  • 63.63
AEIR
  • AEIR
CL:0000604retinal rod cell
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.31e4
  • 1.31e4
56.25
  • 56.25
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.04
  • 42.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.46
  • 37.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000071684.

Cross-references

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