D. rerio Gene: ndc80 - ENSDARG00000071694 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071694
Namendc80
DescriptionNDC80 kinetochore complex component [Source:ZFIN;Acc:ZDB-GENE-030131-904]
OrganismDanio rerio (zebrafish)
Synonym(s)hec (highly expressed in cancer), kntc2, kntc2l, q502u1, wu:fb52e02, zgc:111801
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
749
  • 749
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
779
  • 779
97.39
  • 97.39
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
858
  • 858
97.13
  • 97.13
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
961
  • 961
  • 1.77e3
  • 1.96e3
  • 2.10e3
  • 3.01e3
96.79
  • 96.79
  • 94.08
  • 93.42
  • 92.97
  • 89.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.14e3
  • 1.14e3
  • 2.12e3
  • 1.03e4
96.18
  • 96.18
  • 92.92
  • 65.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.63e3
  • 1.63e3
94.56
  • 94.56
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
2.07e3
  • 2.07e3
  • 2.17e3
  • 2.38e3
  • 2.42e3
  • 3.23e3
  • 3.49e3
93.08
  • 93.08
  • 92.72
  • 92.02
  • 91.91
  • 89.19
  • 88.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.22e3
  • 2.22e3
  • 3.01e3
  • 3.07e3
  • 3.09e3
  • 3.21e3
  • 3.55e3
  • 3.84e3
  • 4.24e3
  • 4.67e3
  • 8.03e3
92.57
  • 92.57
  • 89.92
  • 89.71
  • 89.67
  • 89.27
  • 88.12
  • 87.14
  • 85.81
  • 84.36
  • 73.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
2.37e3
  • 2.37e3
  • 2.56e3
  • 3.00e3
  • 3.02e3
  • 3.60e3
  • 4.33e3
  • 4.55e3
  • 4.63e3
  • 4.84e3
  • 7.68e3
  • 1.23e4
  • 1.30e4
  • 1.37e4
  • 1.39e4
  • 1.41e4
  • 1.50e4
92.05
  • 92.05
  • 91.42
  • 89.97
  • 89.89
  • 87.96
  • 85.52
  • 84.78
  • 84.49
  • 83.79
  • 74.29
  • 58.87
  • 56.36
  • 54.09
  • 53.30
  • 52.85
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.44e3
  • 2.44e3
91.85
  • 91.85
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.49e3
  • 2.49e3
91.67
  • 91.67
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.45e3
  • 3.45e3
88.47
  • 88.47
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.59e3
  • 3.59e3
88.00
  • 88.00
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.45e3
  • 4.45e3
85.11
  • 85.11
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.67e3
  • 4.67e3
  • 1.69e4
84.37
  • 84.37
  • 43.46
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.71e3
  • 4.71e3
  • 1.71e4
84.23
  • 84.23
  • 42.81
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
82.94
  • 82.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.88
  • 80.88
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.03e3
  • 6.03e3
79.83
  • 79.83
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.83e3
  • 6.83e3
  • 1.86e4
77.15
  • 77.15
  • 37.73
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.31e3
  • 7.31e3
  • 1.20e4
75.54
  • 75.54
  • 59.75
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.34e3
  • 8.34e3
  • 1.05e4
  • 1.16e4
72.08
  • 72.08
  • 64.81
  • 61.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.68e3
  • 9.68e3
67.59
  • 67.59
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.97e3
  • 9.97e3
66.63
  • 66.63
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.43
  • 66.43
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
62.90
  • 62.90
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.17
  • 58.17
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.49
  • 57.49
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.38
  • 56.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.53
  • 49.53
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.89
  • 41.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000071694.

Cross-references

EnsemblENSDARG00000071694 (ndc80)
ZFINZDB-GENE-030131-904 (ndc80)
EMBLAY648762, BC095554, CR848037
Uniprot/SPTREMBLE7FG74, E7FG74_DANRE, E9QBF3, E9QBF3_DANRE
Uniprot/SWISSPROTNDC80_DANRE, Q6DRJ7

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