D. rerio Gene: si:dkey-20i20.2 - ENSDARG00000071719 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071719
Namesi:dkey-20i20.2
Descriptionsi:dkey-20i20.2 [Source:ZFIN;Acc:ZDB-GENE-060503-528]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:173728
Paralog(s)365 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.80e3
  • 5.80e3
  • 6.73e3
80.59
  • 80.59
  • 77.47
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
6.78e3
  • 6.78e3
  • 1.25e4
77.29
  • 77.29
  • 57.99
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.92e3
  • 6.92e3
76.83
  • 76.83
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.01e3
  • 9.01e3
  • 1.52e4
69.84
  • 69.84
  • 49.10
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.02e3
  • 9.02e3
69.80
  • 69.80
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.14e3
  • 9.14e3
69.39
  • 69.39
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
9.26e3
  • 9.26e3
  • 9.44e3
  • 9.49e3
  • 1.02e4
  • 1.22e4
69.00
  • 69.00
  • 68.38
  • 68.22
  • 65.97
  • 58.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.64e3
  • 9.64e3
67.73
  • 67.73
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.69e3
  • 9.69e3
67.55
  • 67.55
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.71e3
  • 9.71e3
67.50
  • 67.50
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.81e3
  • 9.81e3
  • 1.30e4
67.14
  • 67.14
  • 56.62
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.30
  • 66.30
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.10
  • 63.10
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.64
  • 60.64
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 1.29e4
58.18
  • 58.18
  • 56.93
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.92
  • 57.92
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.86
  • 57.86
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.76
  • 52.76
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.40
  • 51.40
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.33
  • 50.33
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.49e4
  • 1.49e4
50.03
  • 50.03
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.21
  • 39.21
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.41
  • 38.41
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.30
  • 36.30
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.12
  • 32.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi365 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000071719.

Cross-references

EnsemblENSDARG00000071719 (si:dkey-20i20.2)
ZFINZDB-GENE-060503-528 (si:dkey-20i20.2)
EMBLBX324210
Uniprot/SPTREMBLA3KPU2, A3KPU2_DANRE, A7YYC8, A7YYC8_DANRE

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