Gene: si:ch211-207i20.3 - ENSDARG00000071733 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000071733
Name	si:ch211-207i20.3
Description	si:ch211-207i20.3 [Source:ZFIN;Acc:ZDB-GENE-141222-71]
Organism	Danio rerio (zebrafish)
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000992	female gonad	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000104life cycle	1.19e3 1.19e3 1.50e4	96.01 96.01 49.89	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.21e3 2.21e3	92.61 92.61	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	3.17e3 3.17e3	89.40 89.40	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	3.92e3 3.92e3	86.88 86.88	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	4.32e3 4.32e3 5.91e3	85.53 85.53 80.20	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	4.43e3 4.43e3	85.16 85.16	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	4.64e3 4.64e3	84.46 84.46	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	6.09e3 6.09e3 1.70e4	79.62 79.62 43.16	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	6.36e3 6.36e3	78.71 78.71	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	7.33e3 7.33e3 8.13e3 8.88e3 9.39e3 9.76e3	75.47 75.47 72.79 70.27 68.56 67.33	AEIR AEIR AEIR AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	7.49e3 7.49e3	74.93 74.93	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.98e3 7.98e3	73.29 73.29	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	8.14e3 8.14e3 1.16e4	72.74 72.74 61.10	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	8.20e3 8.20e3	72.54 72.54	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	8.51e3 8.51e3 1.04e4	71.52 71.52 65.05	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	8.92e3 8.92e3	70.14 70.14	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	8.99e3 8.99e3	69.89 69.89	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	9.62e3 9.62e3	67.79 67.79	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	9.71e3 9.71e3	67.49 67.49	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	9.82e3 9.82e3	67.13 67.13	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.00e4 1.00e4	66.35 66.35	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	1.03e4 1.03e4 1.18e4	65.36 65.36 60.36	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.46 63.46	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.14e4 1.14e4	61.77 61.77	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.27e4 1.27e4	57.40 57.40	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.30e4 1.30e4	56.39 56.39	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.34e4 1.34e4	55.16 55.16	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	1 gene ENSDARG00000102586 zgc:152938	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000071733.

Cross-references

Ensembl	ENSDARG00000071733 (si:ch211-207i20.3)
ZFIN	ZDB-GENE-141222-71 (si:ch211-207i20.3)
EMBL	CT030204
Uniprot/SPTREMBL	E7F8Q9, E7F8Q9_DANRE