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D. rerio Gene: itgb1a - ENSDARG00000071863 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000071863
Nameitgb1a
Descriptionintegrin, beta 1a [Source:ZFIN;Acc:ZDB-GENE-060803-2]
OrganismDanio rerio (zebrafish)
Synonym(s)beta1-1, itgb1
Orthologs(s)26 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.87e3
  • 1.87e3
93.74
  • 93.74
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
92.92
  • 92.92
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.69
  • 91.69
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
2.77e3
  • 2.77e3
  • 3.26e3
  • 5.63e3
  • 6.51e3
  • 7.40e3
90.72
  • 90.72
  • 89.09
  • 81.15
  • 78.19
  • 75.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.61
  • 90.61
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
  • 4.25e3
89.33
  • 89.33
  • 85.78
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.95
  • 86.95
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.53
  • 85.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.50e3
  • 4.50e3
84.93
  • 84.93
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.54e3
  • 4.54e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.69e3
  • 4.69e3
  • 1.59e4
84.28
  • 84.28
  • 46.62
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.76e3
  • 4.76e3
  • 4.82e3
84.07
  • 84.07
  • 83.87
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000017Gastrula:50%-epiboly
6.79e3
  • 6.79e3
  • 7.91e3
77.27
  • 77.27
  • 73.52
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
8.05e3
  • 8.05e3
  • 8.33e3
73.03
  • 73.03
  • 72.10
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
72.65
  • 72.65
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.89e3
  • 8.89e3
70.24
  • 70.24
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.97e3
  • 8.97e3
  • 1.10e4
69.98
  • 69.98
  • 63.15
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.54e3
  • 9.54e3
68.07
  • 68.07
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.60
  • 65.60
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
61.90
  • 61.90
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.64
  • 60.64
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.56
  • 60.56
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.26e4
  • 1.26e4
57.83
  • 57.83
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.81
  • 56.81
AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
1.29e4
  • 1.29e4
  • 1.39e4
56.65
  • 56.65
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.33
  • 43.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000071863.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000071863 (itgb1a)
ZFINZDB-GENE-060803-2 (itgb1a)
EMBLBX322549
Uniprot/SPTREMBLF1QG85, F1QG85_DANRE

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