Gene: frmd8 - ENSDARG00000073696 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000073696
Name	frmd8
Description	FERM domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-090812-5]
Organism	Danio rerio (zebrafish)
Synonym(s)	zfbili
Orthologs(s)	16 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.91e3 1.91e3	93.62 93.62	AEIR AEIR
UBERON:0003077	paraxial mesoderm	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	2.84e3 2.84e3	90.48 90.48	AEIR AEIR
UBERON:0002082	cardiac ventricle	[+] 1 stage UBERON:0000066fully formed stage	3.27e3 3.27e3	89.07 89.07	AEIR AEIR
UBERON:0000307	blastula	[+] 5 stages ZFS:0000009Blastula:256-cell ZFS:0000014Blastula:Sphere ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell ZFS:0000016Blastula:30%-epiboly	3.38e3 3.38e3 4.11e3 5.33e3 5.74e3 7.44e3	88.69 88.69 86.23 82.17 80.80 75.09	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 6 stages ZFS:0000020Gastrula:75%-epiboly ZFS:0000017Gastrula:50%-epiboly ZFS:0000021Gastrula:90%-epiboly ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud UBERON:0000109gastrula stage	3.42e3 3.42e3 3.43e3 4.14e3 4.69e3 4.99e3 6.47e3	88.54 88.54 88.52 86.13 84.29 83.28 78.34	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:4000164	caudal fin	[+] 2 stages ZFS:0000033Hatching:Long-pec UBERON:0000066fully formed stage	3.56e3 3.56e3 4.19e3	88.08 88.08 85.99	AEIR AEIR AEIR
UBERON:0003059	presomitic mesoderm	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	3.57e3 3.57e3	88.06 88.06	AEIR AEIR
UBERON:0009620	tail bud paraxial mesoderm	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	3.61e3 3.61e3	87.91 87.91	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 16 stages ZFS:0000020Gastrula:75%-epiboly ZFS:0000021Gastrula:90%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000042Juvenile:Days 30-44 ZFS:0000019Gastrula:Shield ZFS:0000024Segmentation:5-9 somites ZFS:0000036Larval:Day 4 ZFS:0000030Pharyngula:Prim-15 ZFS:0000040Larval:Days 14-20 UBERON:0000106zygote stage ZFS:0000026Segmentation:14-19 somites ZFS:0000037Larval:Day 5 ZFS:0000017Gastrula:50%-epiboly ZFS:0000014Blastula:Sphere	3.73e3 3.73e3 4.26e3 4.44e3 4.81e3 4.83e3 4.90e3 4.95e3 4.97e3 5.36e3 5.42e3 5.75e3 5.79e3 5.97e3 6.10e3 7.91e3 8.96e3	87.52 87.52 85.74 85.14 83.90 83.83 83.58 83.43 83.35 82.05 81.85 80.74 80.61 80.03 79.58 73.52 69.99	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002329	somite	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	3.99e3 3.99e3	86.65 86.65	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	4.12e3 4.12e3	86.20 86.20	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	4.12e3 4.12e3	86.19 86.19	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	4.30e3 4.30e3	85.60 85.60	AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0004707pharyngula stage ZFS:0000024Segmentation:5-9 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000025Segmentation:10-13 somites ZFS:0000026Segmentation:14-19 somites UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 ZFS:0000030Pharyngula:Prim-15	4.35e3 4.35e3 5.42e3 5.79e3 5.96e3 6.14e3 6.19e3 6.67e3 6.72e3 6.74e3 6.80e3	85.44 85.44 81.86 80.63 80.03 79.43 79.29 77.68 77.48 77.42 77.23	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage	4.44e3 4.44e3 7.93e3	85.12 85.12 73.46	AEIR AEIR AEIR
UBERON:0007010	cleaving embryo	[+] 1 stage ZFS:0000005Cleavage:16-cell	4.57e3 4.57e3	84.71 84.71	AEIR AEIR
UBERON:0002548	larva	[+] 3 stages ZFS:0000035Larval:Protruding-mouth UBERON:0000069larval stage ZFS:0000037Larval:Day 5	4.57e3 4.57e3 5.19e3 5.38e3	84.69 84.69 82.62 81.99	AEIR AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	4.65e3 4.65e3 6.51e3	84.43 84.43 78.20	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	4.68e3 4.68e3	84.35 84.35	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	5.07e3 5.07e3	83.03 83.03	AEIR AEIR
UBERON:0000966	retina	[+] 4 stages ZFS:0000031Pharyngula:Prim-25 ZFS:0000033Hatching:Long-pec UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	5.27e3 5.27e3 6.08e3 7.91e3 9.62e3	82.35 82.35 79.65 73.52 67.78	AEIR AEIR AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	5.47e3 5.47e3	81.69 81.69	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	5.56e3 5.56e3	81.37 81.37	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	5.71e3 5.71e3	80.89 80.89	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	5.80e3 5.80e3	80.60 80.60	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	6.09e3 6.09e3 7.30e3	79.63 79.63 75.55	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	6.37e3 6.37e3	78.68 78.68	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	6.57e3 6.57e3	78.01 78.01	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	6.89e3 6.89e3	76.95 76.95	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	7.43e3 7.43e3	75.13 75.13	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	7.68e3 7.68e3	74.28 74.28	AEIR AEIR
UBERON:0007812	post-anal tail	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	9.96e3 9.96e3	66.67 66.67	AEIR AEIR
UBERON:0003051	ear vesicle	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.35e4 1.35e4	54.96 54.96	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	16 species Homo sapiens (human) Mus musculus (mouse) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	16 genes ENSG00000126391 FRMD8 ENSMUSG00000024816 Frmd8 ENSGGOG00000014773 FRMD8 ENSMMUG00000023300 FRMD8 ENSRNOG00000020881 Frmd8 ENSBTAG00000002039 FRMD8 ENSSSCG00000012992 FRMD8 ENSECAG00000007115 FRMD8 ENSOCUG00000023395 FRMD8 ENSCAFG00000013615 FRMD8 ENSFCAG00000001443 FRMD8 ENSCPOG00000010221 FRMD8 ENSMODG00000009777 FRMD8 ENSOANG00000010526 FRMD8 ENSACAG00000012883 FRMD8 ENSXETG00000023119 frmd8	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000073696.

Cross-references

Ensembl	ENSDARG00000073696 (frmd8)
ZFIN	ZDB-GENE-090812-5 (frmd8)
EMBL	CR450793
Uniprot/SPTREMBL	E7F221, E7F221_DANRE