D. rerio Gene: col9a1a - ENSDARG00000073699 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000073699
Namecol9a1a
Descriptioncollagen, type IX, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-080721-25]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:194937
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.19e3
  • 1.19e3
  • 5.19e3
96.02
  • 96.02
  • 82.63
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.57e3
  • 1.57e3
  • 1.91e3
  • 8.74e3
  • 1.16e4
  • 1.33e4
94.75
  • 94.75
  • 93.59
  • 70.72
  • 61.24
  • 55.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
  • 1.85e4
86.59
  • 86.59
  • 38.07
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.50e3
  • 8.50e3
71.53
  • 71.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.63
  • 63.63
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.22e4
  • 1.22e4
59.07
  • 59.07
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.79
  • 51.79
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.48e4
  • 1.48e4
50.39
  • 50.39
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.67
  • 44.67
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.73e4
  • 1.73e4
42.09
  • 42.09
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.91
  • 39.91
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.81
  • 33.81
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.87
  • 32.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.33e4
  • 2.33e4
21.84
  • 21.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000073699.

Cross-references

EnsemblENSDARG00000073699 (col9a1a)
ZFINZDB-GENE-080721-25 (col9a1a)
EMBLBX324177
Uniprot/SPTREMBLF1QTQ2, F1QTQ2_DANRE

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