D. rerio Gene: herc2 - ENSDARG00000073841 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000073841
Nameherc2
DescriptionHECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070718-6]
OrganismDanio rerio (zebrafish)
Synonym(s)fd13h10, wu:fd13h10
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.88e3
  • 2.88e3
90.36
  • 90.36
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
2.93e3
  • 2.93e3
  • 4.91e3
  • 7.76e3
  • 8.92e3
90.20
  • 90.20
  • 83.56
  • 74.01
  • 70.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.21e3
  • 4.21e3
  • 5.89e3
  • 5.95e3
  • 7.01e3
  • 7.07e3
  • 8.40e3
  • 8.53e3
  • 8.96e3
  • 9.40e3
  • 9.41e3
  • 1.07e4
  • 1.15e4
  • 1.16e4
  • 1.19e4
85.92
  • 85.92
  • 80.27
  • 80.07
  • 76.52
  • 76.34
  • 71.87
  • 71.42
  • 70.00
  • 68.53
  • 68.51
  • 64.20
  • 61.61
  • 61.05
  • 60.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
  • 5.60e3
84.19
  • 84.19
  • 81.25
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.17
  • 84.17
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
82.16
  • 82.16
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
6.13e3
  • 6.13e3
  • 1.06e4
  • 1.15e4
  • 1.20e4
  • 1.24e4
  • 1.42e4
79.47
  • 79.47
  • 64.54
  • 61.54
  • 59.70
  • 58.54
  • 52.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.53
  • 78.53
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.55e3
  • 6.55e3
  • 1.28e4
78.06
  • 78.06
  • 57.29
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.96
  • 77.96
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.97e3
  • 6.97e3
76.67
  • 76.67
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.04e3
  • 7.04e3
76.43
  • 76.43
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
7.29e3
  • 7.29e3
  • 7.33e3
  • 8.18e3
  • 9.52e3
  • 1.12e4
  • 1.13e4
  • 1.15e4
  • 1.18e4
  • 1.20e4
  • 1.59e4
75.58
  • 75.58
  • 75.45
  • 72.60
  • 68.13
  • 62.46
  • 62.33
  • 61.45
  • 60.57
  • 59.97
  • 46.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.46e3
  • 7.46e3
75.01
  • 75.01
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.67e3
  • 7.67e3
  • 8.84e3
  • 9.20e3
74.30
  • 74.30
  • 70.42
  • 69.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.97e3
  • 7.97e3
73.33
  • 73.33
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.27
  • 73.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.03e3
  • 8.03e3
73.13
  • 73.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
72.07
  • 72.07
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
8.35e3
  • 8.35e3
  • 9.20e3
  • 9.75e3
  • 1.15e4
  • 1.16e4
72.05
  • 72.05
  • 69.21
  • 67.34
  • 61.53
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.45e3
  • 8.45e3
  • 8.76e3
71.70
  • 71.70
  • 70.66
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.46e3
  • 8.46e3
71.66
  • 71.66
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.83e3
  • 8.83e3
70.44
  • 70.44
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.43e3
  • 9.43e3
68.44
  • 68.44
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
67.85
  • 67.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.39
  • 65.39
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.04e4
  • 1.04e4
65.32
  • 65.32
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.87
  • 64.87
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.11e4
  • 1.11e4
62.71
  • 62.71
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.59
  • 60.59
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.58
  • 54.58
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000073841.

Cross-references

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