Gene: si:ch1073-165f9.2 - ENSDARG00000073876 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000073876
Name	si:ch1073-165f9.2
Description	si:ch1073-165f9.2 [Source:ZFIN;Acc:ZDB-GENE-141216-228]
Organism	Danio rerio (zebrafish)
Paralog(s)	31 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	3.86e3 3.86e3	87.08 87.08	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	5.41e3 5.41e3	81.88 81.88	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	7.73e3 7.73e3	74.13 74.13	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.09e4 1.09e4 1.46e4	63.48 63.48 51.17	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	1.09e4 1.09e4 1.77e4	63.45 63.45 40.77	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.16e4 1.16e4	61.07 61.07	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	1.19e4 1.19e4 1.36e4	60.30 60.30 54.45	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.35e4 1.35e4	54.95 54.95	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec	1.39e4 1.39e4 1.50e4 1.59e4 1.63e4 1.74e4	53.57 53.57 49.77 46.86 45.49 41.75	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.40e4 1.40e4	53.10 53.10	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.42e4 1.42e4	52.56 52.56	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.42e4 1.42e4	52.56 52.56	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	1.42e4 1.42e4 1.55e4	52.29 52.29 48.17	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000104life cycle	1.43e4 1.43e4 1.50e4	52.23 52.23 49.92	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.45e4 1.45e4	51.57 51.57	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.59e4 1.59e4	46.75 46.75	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.62e4 1.62e4	45.83 45.83	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.62e4 1.62e4 1.67e4	45.82 45.82 44.03	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.66e4 1.66e4	44.42 44.42	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.93e4 1.93e4	35.40 35.40	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.94e4 1.94e4	34.90 34.90	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.97e4 1.97e4	34.16 34.16	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.09e4 2.09e4	29.97 29.97	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Eukaryota	31 genes ENSDARG00000006915 arl8ba ENSDARG00000009484 arf1 ENSDARG00000014763 arf2a ENSDARG00000015404 arl3l2 ENSDARG00000016393 arf2b ENSDARG00000018627 arl5a ENSDARG00000032056 arl6 ENSDARG00000033320 sar1ab ENSDARG00000035719 arl5c ENSDARG00000036637 arl11 ENSDARG00000036998 arf3b ENSDARG00000045989 arf4a ENSDARG00000052928 arf6b ENSDARG00000056794 ARL3 (1 to many) ENSDARG00000057857 arfrp1 ENSDARG00000059498 arl16 ENSDARG00000063223 arl14 ENSDARG00000069496 arl2 ENSDARG00000070318 arl8bb ENSDARG00000070472 ARF5 ENSDARG00000070539 arf3a ENSDARG00000071409 arl3 ENSDARG00000074210 zgc:110286 ENSDARG00000078686 arl8a ENSDARG00000094709 arl8 ENSDARG00000100339 arf4b ENSDARG00000101626 arf6a ENSDARG00000101680 arl1 ENSDARG00000102393 arl3l1 ENSDARG00000103403 sar1b ENSDARG00000103858 arf4a	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000073876.

Cross-references

Ensembl	ENSDARG00000073876 (si:ch1073-165f9.2)
ZFIN	ZDB-GENE-141216-228 (si:ch1073-165f9.2)
Uniprot/SPTREMBL	E7F5T1, E7F5T1_DANRE