D. rerio Gene: znf1085 - ENSDARG00000073915 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000073915
Nameznf1085
Descriptionzinc finger protein 1085 [Source:ZFIN;Acc:ZDB-GENE-080218-7]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:174654
Paralog(s)201 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
6.42e3
  • 6.42e3
  • 1.05e4
78.50
  • 78.50
  • 64.70
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.68e3
  • 6.68e3
  • 8.22e3
77.65
  • 77.65
  • 72.46
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
  • 1.75e4
58.81
  • 58.81
  • 41.36
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
  • 1.41e4
  • 1.45e4
  • 1.75e4
  • 1.88e4
57.14
  • 57.14
  • 52.74
  • 51.58
  • 41.55
  • 36.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.35e4
  • 1.35e4
54.65
  • 54.65
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.36e4
  • 1.36e4
54.50
  • 54.50
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.90
  • 53.90
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.04
  • 50.04
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.56e4
  • 1.56e4
  • 2.07e4
47.60
  • 47.60
  • 30.67
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.76
  • 45.76
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.49
  • 43.49
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.44
  • 42.44
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.24
  • 42.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.39
  • 41.39
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.22
  • 41.22
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.82e4
  • 1.82e4
  • 1.94e4
39.19
  • 39.19
  • 35.02
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.14
  • 33.14
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.88
  • 32.88
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.73
  • 32.73
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
26.97
  • 26.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala201 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000073915.

Cross-references

EnsemblENSDARG00000073915 (znf1085)
ZFINZDB-GENE-080218-7 (znf1085)
EMBLCT997811
Uniprot/SPTREMBLF1REH3, F1REH3_DANRE

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