Gene: slc4a7 - ENSDARG00000073952 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000073952
Name	slc4a7
Description	solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Organism	Danio rerio (zebrafish)
Synonym(s)	zmp:0000001144
Orthologs(s)	7 orthologs
Paralog(s)	7 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	5.40e3 5.40e3	81.92 81.92	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	5.58e3 5.58e3 6.55e3	81.31 81.31 78.05	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	5.72e3 5.72e3 6.64e3	80.85 80.85 77.78	AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	5.81e3 5.81e3	80.56 80.56	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	6.11e3 6.11e3	79.56 79.56	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	6.75e3 6.75e3	77.39 77.39	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	6.85e3 6.85e3	77.05 77.05	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	7.29e3 7.29e3	75.61 75.61	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	8.61e3 8.61e3 1.28e4	71.18 71.18 57.18	AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	8.79e3 8.79e3 1.82e4	70.59 70.59 38.91	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	9.27e3 9.27e3	68.96 68.96	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	9.54e3 9.54e3	68.07 68.07	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	9.74e3 9.74e3	67.38 67.38	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.01e4 1.01e4	66.23 66.23	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5	1.11e4 1.11e4 1.17e4 1.27e4 1.36e4 1.49e4	62.85 62.85 60.82 57.31 54.37 49.96	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.13e4 1.13e4	62.22 62.22	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.78 60.78	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.20e4 1.20e4	59.88 59.88	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.21e4 1.21e4	59.44 59.44	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.28e4 1.28e4	57.17 57.17	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.31e4 1.31e4	56.19 56.19	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.36e4 1.36e4	54.31 54.31	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.37e4 1.37e4 1.49e4	54.03 54.03 50.14	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.47e4 1.47e4	50.86 50.86	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.60e4 1.60e4	46.41 46.41	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.71e4 1.71e4	42.70 42.70	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	7 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	7 genes FBgn0259111 Ndae1 WBGene00009920 abts-1 FBgn0091059 GF14032 FBgn0140536 GI17795 FBgn0193905 GD22503 FBgn0204787 GJ17618 FBgn0235788 GE18368	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000073952.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	3 genes ENSDARG00000015531 slc4a8 ENSDARG00000060303 slc4a10b ENSDARG00000063133 slc4a10a	Compare expression	[+]
Bilateria	7 genes ENSDARG00000002771 SLC4A5 (1 to many) ENSDARG00000013730 slc4a4a ENSDARG00000015531 slc4a8 ENSDARG00000044808 slc4a4b ENSDARG00000060303 slc4a10b ENSDARG00000063133 slc4a10a ENSDARG00000104387 slc4a5	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000073952.

Cross-references

Ensembl	ENSDARG00000073952 (slc4a7)
ZFIN	ZDB-GENE-140106-104 (slc4a7)
Uniprot/SPTREMBL	E7F583, E7F583_DANRE