D. rerio Gene: CYSTM1 (1 to many) - ENSDARG00000073961 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000073961
NameCYSTM1 (1 to many)
Descriptionsi:ch211-160j14.2 [Source:ZFIN;Acc:ZDB-GENE-091118-113]
OrganismDanio rerio (zebrafish)
Synonym(s)c5orf32, orf1-fl49
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
448
  • 448
98.50
  • 98.50
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
525
  • 525
98.25
  • 98.25
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.68e3
  • 1.68e3
  • 6.90e3
94.36
  • 94.36
  • 76.90
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.88
  • 92.88
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
87.67
  • 87.67
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.30
  • 86.30
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.20e3
  • 4.20e3
85.93
  • 85.93
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.76e3
  • 4.76e3
84.06
  • 84.06
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.56
  • 82.56
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.30
  • 74.30
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.30
  • 74.30
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.50e3
  • 8.50e3
  • 1.37e4
71.52
  • 71.52
  • 54.17
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.02e3
  • 9.02e3
  • 1.75e4
69.80
  • 69.80
  • 41.46
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.35e4
  • 1.36e4
  • 1.61e4
  • 2.11e4
61.10
  • 61.10
  • 54.78
  • 54.50
  • 46.11
  • 29.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.42
  • 60.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.38
  • 59.38
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.06
  • 54.06
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
  • 1.72e4
47.01
  • 47.01
  • 42.32
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.66e4
  • 1.66e4
44.33
  • 44.33
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
  • 2.21e4
41.30
  • 41.30
  • 26.16
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.76
  • 40.76
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
36.96
  • 36.96
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.59
  • 35.59
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000073961.

Cross-references

EnsemblENSDARG00000073961 (CYSTM1 (1 to many))
HGNCHGNC:30239 (CYSTM1 (1 to many))
ZFINZDB-GENE-091118-113 (si:ch211-160j14.2)
EMBLBX927388
Uniprot/SPTREMBLE7F2I6, E7F2I6_DANRE

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