Gene: pctp - ENSDARG00000073985 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000073985
Name	pctp
Description	phosphatidylcholine transfer protein [Source:ZFIN;Acc:ZDB-GENE-081022-182]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:195139, zgc:195150
Orthologs(s)	17 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	5.49e3 5.49e3 1.03e4	81.61 81.61 65.49	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	5.85e3 5.85e3	80.40 80.40	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	5.94e3 5.94e3	80.10 80.10	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	5.97e3 5.97e3 7.86e3	80.03 80.03 73.68	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	5.97e3 5.97e3	80.00 80.00	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	6.18e3 6.18e3 8.68e3	79.31 79.31 70.94	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	6.57e3 6.57e3	78.00 78.00	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	6.75e3 6.75e3 1.71e4	77.40 77.40 42.63	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	7.49e3 7.49e3	74.92 74.92	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	8.04e3 8.04e3	73.09 73.09	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	8.47e3 8.47e3 1.25e4	71.64 71.64 58.00	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	8.48e3 8.48e3	71.62 71.62	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	8.50e3 8.50e3 1.18e4 1.22e4 1.42e4 1.43e4	71.53 71.53 60.38 59.13 52.58 52.26	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	9.19e3 9.19e3	69.22 69.22	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	9.20e3 9.20e3	69.21 69.21	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	9.66e3 9.66e3	67.66 67.66	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.02e4 1.02e4	65.96 65.96	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.04e4 1.04e4	65.24 65.24	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.23e4 1.23e4	58.86 58.86	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.25e4 1.25e4	58.20 58.20	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.28e4 1.28e4	57.10 57.10	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.31e4 1.31e4	56.27 56.27	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.34e4 1.34e4	55.24 55.24	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.35e4 1.35e4	54.93 54.93	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole)	17 genes ENSG00000141179 PCTP ENSMUSG00000020553 Pctp ENSPTRG00000009427 PCTP ENSGGOG00000022146 PCTP ENSMMUG00000006066 PCTP ENSRNOG00000002425 Pctp ENSBTAG00000018706 ENSSSCG00000017608 ENSECAG00000019380 PCTP ENSOCUG00000008956 PCTP ENSCAFG00000017369 PCTP ENSFCAG00000023287 PCTP ENSCPOG00000013507 PCTP ENSEEUG00000014717 PCTP ENSMODG00000014840 PCTP ENSGALG00000003099 PCTP ENSACAG00000002610 PCTP	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000073985.

Cross-references

Ensembl	ENSDARG00000073985 (pctp)
ZFIN	ZDB-GENE-081022-182 (pctp)
Uniprot/SPTREMBL	B3DIL4, B3DIL4_DANRE