D. rerio Gene: slc6a11a - ENSDARG00000074002 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074002
Nameslc6a11a
Descriptionsolute carrier family 6 (neurotransmitter transporter), member 11a [Source:ZFIN;Acc:ZDB-GENE-030131-3729]
OrganismDanio rerio (zebrafish)
Synonym(s)fa11f11, fc51c07, slc6a11, slc6a11 {eco:0000313|embl:aai41784.1,gn eco:0000313|zfin:zdb-gene-030131-3729}, wu:fa11f11, wu:fc51c07
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
950
  • 950
  • 4.56e3
96.82
  • 96.82
  • 84.73
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
3.56e3
  • 3.56e3
  • 8.83e3
  • 8.87e3
  • 1.17e4
  • 1.29e4
  • 1.41e4
  • 1.49e4
  • 1.50e4
  • 1.72e4
  • 1.73e4
  • 1.77e4
  • 1.78e4
  • 1.83e4
88.10
  • 88.10
  • 70.42
  • 70.32
  • 60.70
  • 56.85
  • 52.63
  • 50.20
  • 49.81
  • 42.53
  • 42.10
  • 40.62
  • 40.56
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
86.79
  • 86.79
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
4.95e3
  • 4.95e3
  • 5.89e3
  • 5.98e3
  • 6.28e3
  • 7.03e3
  • 9.36e3
  • 9.92e3
  • 1.13e4
  • 1.25e4
  • 1.78e4
83.44
  • 83.44
  • 80.30
  • 79.97
  • 78.97
  • 76.46
  • 68.67
  • 66.79
  • 62.19
  • 58.09
  • 40.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.65e3
  • 5.65e3
81.09
  • 81.09
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.69e3
  • 7.69e3
74.25
  • 74.25
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.06e3
  • 9.06e3
69.67
  • 69.67
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
  • 2.35e4
66.50
  • 66.50
  • 21.20
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.15
  • 64.15
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
57.86
  • 57.86
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.30e4
  • 1.30e4
56.35
  • 56.35
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.34e4
  • 1.34e4
  • 1.53e4
  • 1.70e4
55.07
  • 55.07
  • 48.88
  • 43.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.68e4
  • 1.68e4
  • 1.75e4
43.80
  • 43.80
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.70e4
  • 1.70e4
  • 1.76e4
42.94
  • 42.94
  • 41.09
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.82
  • 39.82
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.96
  • 32.96
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.36
  • 29.36
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.89
  • 23.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria11 genesCompare expression
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000074002.

Cross-references

EnsemblENSDARG00000074002 (slc6a11a)
ZFINZDB-GENE-030131-3729 (slc6a11a)
EMBLBC141783, CU855953
Uniprot/SPTREMBLA5D8R6, A5D8R6_DANRE

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