D. rerio Gene: tnrc6b - ENSDARG00000074161 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074161
Nametnrc6b
Descriptiontrinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
OrganismDanio rerio (zebrafish)
Synonym(s)fa01f05, fb21h03, fc23h10, hm:zeh0114, im:6968518, wu:fa01f05, wu:fb21h03, wu:fc23h10
Orthologs(s)17 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
694
  • 694
  • 1.30e3
  • 3.51e3
  • 7.86e3
97.68
  • 97.68
  • 95.66
  • 88.25
  • 73.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.32e3
  • 1.32e3
95.57
  • 95.57
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.33e3
  • 1.33e3
  • 2.75e3
  • 2.82e3
  • 3.40e3
  • 3.57e3
  • 3.66e3
  • 5.52e3
  • 6.07e3
  • 6.75e3
  • 6.87e3
95.55
  • 95.55
  • 90.80
  • 90.57
  • 88.62
  • 88.07
  • 87.75
  • 81.51
  • 79.68
  • 77.39
  • 77.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.58e3
  • 1.58e3
94.73
  • 94.73
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.08e3
  • 2.08e3
  • 2.69e3
93.04
  • 93.04
  • 90.99
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.09e3
  • 2.09e3
93.00
  • 93.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
2.30e3
  • 2.30e3
  • 3.76e3
  • 5.11e3
  • 6.49e3
  • 7.00e3
92.31
  • 92.31
  • 87.42
  • 82.89
  • 78.27
  • 76.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.31e3
  • 2.31e3
92.26
  • 92.26
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
2.39e3
  • 2.39e3
  • 2.88e3
  • 3.02e3
  • 3.21e3
  • 5.06e3
  • 7.61e3
92.00
  • 92.00
  • 90.38
  • 89.89
  • 89.24
  • 83.06
  • 74.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
2.43e3
  • 2.43e3
  • 2.87e3
  • 3.01e3
  • 3.12e3
  • 3.41e3
  • 3.45e3
  • 3.49e3
  • 3.50e3
  • 3.59e3
  • 3.65e3
  • 4.20e3
  • 4.31e3
  • 4.54e3
  • 4.59e3
91.85
  • 91.85
  • 90.38
  • 89.91
  • 89.54
  • 88.60
  • 88.45
  • 88.31
  • 88.28
  • 87.98
  • 87.79
  • 85.95
  • 85.56
  • 84.79
  • 84.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.59
  • 89.59
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.97
  • 86.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.95e3
  • 3.95e3
  • 4.77e3
  • 8.86e3
86.78
  • 86.78
  • 84.03
  • 70.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.74
  • 85.74
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.69e3
  • 4.69e3
  • 6.26e3
84.29
  • 84.29
  • 79.05
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
  • 6.24e3
84.16
  • 84.16
  • 79.10
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.41e3
  • 5.41e3
81.90
  • 81.90
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
81.78
  • 81.78
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.51e3
  • 5.51e3
81.57
  • 81.57
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.33
  • 81.33
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.00e3
  • 6.00e3
79.92
  • 79.92
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.26e3
  • 6.26e3
79.02
  • 79.02
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
78.88
  • 78.88
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.60
  • 78.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.44e3
  • 6.44e3
78.43
  • 78.43
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.90
  • 77.90
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.28
  • 73.28
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.42e3
  • 8.42e3
71.80
  • 71.80
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.44e3
  • 8.44e3
71.74
  • 71.74
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.81e3
  • 8.81e3
70.49
  • 70.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000074161.

Cross-references

EnsemblENSDARG00000074161 (tnrc6b)
ZFINZDB-GENE-030131-13 (tnrc6b)
EMBLBX000473, BX649366, CT030711
Uniprot/SPTREMBLU3JAU2, U3JAU2_DANRE

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