D. rerio Gene: zgc:162879 - ENSDARG00000074163 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074163
Namezgc:162879
Descriptionzgc:162879 [Source:ZFIN;Acc:ZDB-GENE-070424-92]
OrganismDanio rerio (zebrafish)
Synonym(s)a4qp53, rasef
Orthologs(s)1 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
270
  • 270
  • 346
  • 750
  • 8.22e3
  • 1.36e4
99.10
  • 99.10
  • 98.85
  • 97.49
  • 72.48
  • 54.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
670
  • 670
97.76
  • 97.76
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.60e3
  • 1.60e3
94.63
  • 94.63
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.92e3
  • 1.92e3
93.58
  • 93.58
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
2.11e3
  • 2.11e3
  • 1.39e4
  • 1.49e4
  • 1.65e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
92.95
  • 92.95
  • 53.30
  • 50.20
  • 44.72
  • 40.56
  • 40.38
  • 40.18
  • 39.42
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.82
  • 84.82
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.61e3
  • 4.61e3
84.58
  • 84.58
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.96
  • 77.96
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.00e3
  • 7.00e3
76.58
  • 76.58
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.14
  • 66.14
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.22
  • 62.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.30
  • 61.30
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.57
  • 59.57
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.84
  • 56.84
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
55.08
  • 55.08
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.34e4
  • 1.34e4
  • 1.75e4
  • 1.76e4
54.97
  • 54.97
  • 41.42
  • 40.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.00
  • 54.00
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
  • 1.54e4
53.58
  • 53.58
  • 48.57
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
1.44e4
  • 1.44e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
  • 1.61e4
  • 1.78e4
51.75
  • 51.75
  • 50.16
  • 49.97
  • 49.70
  • 45.97
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.46e4
  • 1.46e4
  • 1.53e4
51.00
  • 51.00
  • 48.92
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.90
  • 45.90
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.70e4
  • 1.70e4
  • 1.77e4
  • 1.84e4
42.98
  • 42.98
  • 40.88
  • 38.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.75e4
  • 1.75e4
  • 1.82e4
41.41
  • 41.41
  • 39.01
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.86
  • 40.86
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.06
  • 40.06
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.72
  • 36.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000074163.

Cross-references

EnsemblENSDARG00000074163 (zgc:162879)
ZFINZDB-GENE-070424-92 (zgc:162879)
EMBLBC139657, CT573123
Uniprot/SWISSPROTA5WW21, RASEF_DANRE

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