D. rerio Gene: COLQ (1 to many) - ENSDARG00000074216 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074216
NameCOLQ (1 to many)
Descriptionwu:fc38h03 [Source:ZFIN;Acc:ZDB-GENE-030131-3430]
OrganismDanio rerio (zebrafish)
Synonym(s)ead, fc38h03
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.71e3
  • 2.71e3
90.92
  • 90.92
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.82e3
  • 2.82e3
90.54
  • 90.54
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.08
  • 78.08
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.49e3
  • 7.49e3
74.92
  • 74.92
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
8.12e3
  • 8.12e3
  • 9.58e3
  • 1.29e4
  • 1.65e4
  • 1.82e4
72.82
  • 72.82
  • 67.92
  • 56.83
  • 44.89
  • 39.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.10e4
  • 1.10e4
  • 1.19e4
63.16
  • 63.16
  • 60.07
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.12e4
  • 1.12e4
  • 1.17e4
62.60
  • 62.60
  • 60.84
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.32e4
  • 1.32e4
  • 1.57e4
55.80
  • 55.80
  • 47.52
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.86
  • 44.86
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
41.99
  • 41.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.74e4
  • 1.74e4
41.63
  • 41.63
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.10
  • 39.10
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.79
  • 32.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000074216.

Cross-references

EnsemblENSDARG00000074216 (COLQ (1 to many))
HGNCHGNC:2226 (COLQ (1 to many))
ZFINZDB-GENE-030131-3430 (wu:fc38h03)
Uniprot/SPTREMBLF1RCT5, F1RCT5_DANRE

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