D. rerio Gene: sptlc2b - ENSDARG00000074287 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074287
Namesptlc2b
Descriptionserine palmitoyltransferase, long chain base subunit 2b [Source:ZFIN;Acc:ZDB-GENE-080305-8]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:175221
Orthologs(s)26 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.64e3
  • 2.64e3
91.17
  • 91.17
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
87.58
  • 87.58
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.58e3
  • 4.58e3
84.67
  • 84.67
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.04
  • 84.04
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
5.64e3
  • 5.64e3
  • 7.74e3
  • 1.06e4
  • 1.10e4
  • 1.13e4
  • 1.37e4
81.12
  • 81.12
  • 74.09
  • 64.52
  • 63.33
  • 62.24
  • 53.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.71e3
  • 5.71e3
  • 1.03e4
80.87
  • 80.87
  • 65.60
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.02e3
  • 6.02e3
79.85
  • 79.85
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.76e3
  • 6.76e3
77.38
  • 77.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.52e3
  • 7.52e3
74.84
  • 74.84
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.62e3
  • 7.62e3
74.47
  • 74.47
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.71e3
  • 7.71e3
  • 8.03e3
74.17
  • 74.17
  • 73.10
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
74.12
  • 74.12
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.85e3
  • 7.85e3
73.71
  • 73.71
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
8.30e3
  • 8.30e3
  • 8.56e3
  • 8.65e3
  • 1.06e4
  • 1.09e4
  • 1.18e4
  • 1.36e4
  • 1.40e4
  • 1.52e4
72.21
  • 72.21
  • 71.34
  • 71.03
  • 64.35
  • 63.66
  • 60.37
  • 54.48
  • 53.12
  • 49.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.54e3
  • 8.54e3
71.39
  • 71.39
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.73e3
  • 8.73e3
70.78
  • 70.78
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
9.40e3
  • 9.40e3
  • 9.41e3
  • 1.01e4
  • 1.02e4
  • 1.29e4
68.52
  • 68.52
  • 68.49
  • 66.22
  • 65.71
  • 56.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.39
  • 66.39
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.03e4
  • 1.03e4
65.36
  • 65.36
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.05e4
  • 1.05e4
  • 1.46e4
64.99
  • 64.99
  • 50.99
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.64
  • 62.64
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.63
  • 62.63
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.19e4
  • 1.48e4
62.62
  • 62.62
  • 60.07
  • 50.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.13e4
  • 1.13e4
62.23
  • 62.23
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.86
  • 60.86
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.67
  • 58.67
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.41
  • 58.41
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
  • 1.31e4
  • 1.31e4
  • 1.36e4
  • 1.37e4
  • 1.38e4
  • 1.42e4
  • 1.43e4
  • 1.47e4
  • 1.47e4
  • 1.50e4
  • 1.50e4
  • 1.51e4
  • 1.53e4
  • 1.58e4
57.23
  • 57.23
  • 56.25
  • 56.12
  • 54.56
  • 54.13
  • 53.65
  • 52.32
  • 52.02
  • 50.67
  • 50.64
  • 49.81
  • 49.80
  • 49.38
  • 48.78
  • 47.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.30e4
  • 1.30e4
56.35
  • 56.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000074287.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Chordata2 genesCompare expression
Eukaryota4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000074287.

Cross-references

EnsemblENSDARG00000074287 (sptlc2b)
ZFINZDB-GENE-080305-8 (sptlc2b)
EMBLCABZ01045941, CABZ01045942, CABZ01045943, CABZ01045944, CABZ01045945, CABZ01045946, CABZ01045947
Uniprot/SPTREMBLF1Q992, F1Q992_DANRE

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