D. rerio Gene: rbfox3l - ENSDARG00000074310 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074310
Namerbfox3l
DescriptionRNA binding protein, fox-1 homolog 3, like [Source:ZFIN;Acc:ZDB-GENE-091204-46]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch73-322f21.1
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.25e3
  • 6.25e3
79.06
  • 79.06
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.20e3
  • 9.20e3
69.18
  • 69.18
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
9.42e3
  • 9.42e3
  • 1.05e4
68.47
  • 68.47
  • 64.97
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.10e4
  • 1.10e4
63.15
  • 63.15
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
1.22e4
  • 1.22e4
  • 1.34e4
  • 1.46e4
  • 1.49e4
59.08
  • 59.08
  • 54.99
  • 50.98
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
58.99
  • 58.99
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.29e4
  • 1.34e4
57.11
  • 57.11
  • 56.79
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
  • 1.94e4
  • 1.95e4
  • 2.00e4
  • 2.06e4
56.29
  • 56.29
  • 35.03
  • 34.84
  • 33.02
  • 31.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.59
  • 55.59
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.90
  • 49.90
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
  • 2.16e4
47.71
  • 47.71
  • 27.63
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.44
  • 47.44
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.01
  • 43.01
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.01
  • 41.01
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.33
  • 37.33
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.93e4
  • 1.93e4
  • 1.97e4
35.45
  • 35.45
  • 34.17
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.28
  • 31.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.61
  • 24.61
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000074310.

Cross-references

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