D. rerio Gene: SPEN (1 to many) - ENSDARG00000074332 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074332
NameSPEN (1 to many)
Descriptionsi:ch1073-335m2.2 [Source:ZFIN;Acc:ZDB-GENE-081104-82]
OrganismDanio rerio (zebrafish)
Synonym(s)fb69f10, kiaa0929, mint, rbm15c, sharp
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.23e3
  • 1.23e3
  • 3.62e3
  • 5.70e3
  • 8.19e3
  • 9.30e3
95.89
  • 95.89
  • 87.88
  • 80.92
  • 72.59
  • 68.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.48e3
  • 1.48e3
95.04
  • 95.04
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.80e3
  • 1.80e3
93.98
  • 93.98
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.09
  • 92.09
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.96e3
  • 2.96e3
  • 8.48e3
90.08
  • 90.08
  • 71.62
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.22e3
  • 3.22e3
89.21
  • 89.21
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.87
  • 88.87
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
  • 8.13e3
88.37
  • 88.37
  • 72.79
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.57e3
  • 3.57e3
88.05
  • 88.05
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
3.68e3
  • 3.68e3
  • 4.60e3
  • 4.64e3
  • 7.54e3
  • 8.10e3
  • 8.72e3
87.68
  • 87.68
  • 84.60
  • 84.47
  • 74.77
  • 72.87
  • 70.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.80
  • 86.80
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.99e3
  • 3.99e3
86.64
  • 86.64
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.32
  • 86.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.16e3
  • 4.16e3
86.06
  • 86.06
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.27e3
  • 4.27e3
  • 4.29e3
  • 5.28e3
  • 5.56e3
  • 5.86e3
  • 7.85e3
  • 9.54e3
  • 9.59e3
  • 1.17e4
  • 1.17e4
85.71
  • 85.71
  • 85.64
  • 82.33
  • 81.39
  • 80.39
  • 73.72
  • 68.07
  • 67.91
  • 60.97
  • 60.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
4.30e3
  • 4.30e3
  • 5.61e3
  • 6.17e3
  • 6.20e3
  • 6.89e3
  • 7.42e3
  • 7.65e3
  • 8.00e3
  • 8.18e3
  • 8.57e3
  • 8.77e3
  • 8.86e3
  • 8.87e3
  • 1.05e4
85.60
  • 85.60
  • 81.23
  • 79.33
  • 79.24
  • 76.93
  • 75.15
  • 74.39
  • 73.21
  • 72.61
  • 71.32
  • 70.63
  • 70.33
  • 70.31
  • 64.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.57
  • 85.57
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.52e3
  • 4.52e3
  • 8.73e3
  • 9.52e3
  • 9.94e3
84.87
  • 84.87
  • 70.78
  • 68.14
  • 66.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.78e3
  • 4.78e3
  • 1.09e4
84.01
  • 84.01
  • 63.58
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
83.52
  • 83.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.31
  • 81.31
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.26
  • 81.26
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.30e3
  • 6.30e3
78.90
  • 78.90
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.90
  • 76.90
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.08e3
  • 7.08e3
  • 8.44e3
  • 1.08e4
76.29
  • 76.29
  • 71.73
  • 63.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.41e3
  • 7.41e3
75.21
  • 75.21
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.22e3
  • 8.22e3
72.46
  • 72.46
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.26e3
  • 8.26e3
72.33
  • 72.33
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.85e3
  • 9.85e3
  • 1.04e4
67.03
  • 67.03
  • 65.11
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.09e4
  • 1.09e4
63.64
  • 63.64
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.22
  • 62.22
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.25
  • 54.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000074332.

Cross-references

EnsemblENSDARG00000074332 (SPEN (1 to many))
HGNCHGNC:17575 (SPEN (1 to many))
ZFINZDB-GENE-081104-82 (si:ch1073-335m2.2)
EMBLCU652212, CU693473
Uniprot/SPTREMBLB8K0C7, B8K0C7_DANRE, F1Q618, F1Q618_DANRE, F1R7Z5, F1R7Z5_DANRE

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