D. rerio Gene: TTC9 - ENSDARG00000074363 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074363
NameTTC9
Descriptionsi:ch211-259k16.3 [Source:ZFIN;Acc:ZDB-GENE-090312-172]
OrganismDanio rerio (zebrafish)
Synonym(s)kiaa0227, ttc9a
Orthologs(s)16 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.55e3
  • 2.55e3
  • 1.48e4
91.45
  • 91.45
  • 50.49
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.12e3
  • 4.12e3
  • 8.36e3
86.19
  • 86.19
  • 72.02
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
5.65e3
  • 5.65e3
  • 9.69e3
  • 1.39e4
81.08
  • 81.08
  • 67.56
  • 53.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
7.86e3
  • 7.86e3
  • 1.28e4
  • 1.42e4
  • 1.58e4
  • 1.59e4
  • 1.65e4
  • 1.69e4
  • 1.69e4
  • 1.75e4
73.70
  • 73.70
  • 57.06
  • 52.52
  • 47.11
  • 46.88
  • 44.82
  • 43.46
  • 43.34
  • 41.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
9.77e3
  • 9.77e3
  • 1.35e4
  • 1.38e4
  • 1.44e4
  • 1.52e4
  • 1.60e4
  • 1.61e4
  • 1.61e4
  • 1.63e4
  • 1.69e4
  • 1.70e4
67.28
  • 67.28
  • 54.64
  • 53.91
  • 51.74
  • 49.07
  • 46.50
  • 46.22
  • 46.19
  • 45.42
  • 43.56
  • 43.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.73
  • 65.73
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.62
  • 62.62
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.15e4
  • 1.15e4
  • 1.23e4
  • 1.41e4
61.50
  • 61.50
  • 58.96
  • 52.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.42e4
  • 1.42e4
52.55
  • 52.55
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.42e4
  • 1.42e4
52.45
  • 52.45
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.88
  • 51.88
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.53e4
  • 1.53e4
  • 1.54e4
48.83
  • 48.83
  • 48.55
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.65
  • 47.65
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.58e4
  • 1.58e4
  • 1.59e4
  • 1.75e4
47.20
  • 47.20
  • 46.83
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.13
  • 46.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.32
  • 44.32
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.29
  • 43.29
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
41.99
  • 41.99
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.27
  • 41.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.66
  • 40.66
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.19
  • 39.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Eumetazoa2 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000074363.

Cross-references

EnsemblENSDARG00000074363 (TTC9)
HGNCHGNC:20267 (TTC9)
ZFINZDB-GENE-090312-172 (si:ch211-259k16.3)
Uniprot/SPTREMBLF1R268, F1R268_DANRE

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