D. rerio Gene: sh3yl1 - ENSDARG00000074393 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074393
Namesh3yl1
DescriptionSH3 and SYLF domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040128-16]
OrganismDanio rerio (zebrafish)
Synonym(s)sb:cb1095
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
501
  • 501
98.33
  • 98.33
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
676
  • 676
97.74
  • 97.74
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
806
  • 806
  • 1.62e3
  • 1.85e3
  • 1.97e3
  • 6.62e3
97.30
  • 97.30
  • 94.57
  • 93.81
  • 93.42
  • 77.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.58e3
  • 1.58e3
94.71
  • 94.71
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
2.63e3
  • 2.63e3
  • 5.44e3
  • 7.20e3
  • 7.86e3
  • 9.15e3
  • 1.11e4
  • 1.26e4
  • 1.35e4
  • 1.35e4
  • 1.35e4
  • 1.39e4
  • 1.39e4
  • 1.41e4
  • 1.42e4
91.20
  • 91.20
  • 81.78
  • 75.89
  • 73.67
  • 69.35
  • 62.85
  • 57.70
  • 54.88
  • 54.86
  • 54.76
  • 53.50
  • 53.31
  • 52.82
  • 52.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.03e3
  • 3.03e3
89.84
  • 89.84
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
3.06e3
  • 3.06e3
  • 3.82e3
  • 6.45e3
  • 6.55e3
  • 8.02e3
  • 8.48e3
89.77
  • 89.77
  • 87.20
  • 78.42
  • 78.08
  • 73.16
  • 71.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.74
  • 89.74
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.07
  • 89.07
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
  • 8.07e3
83.22
  • 83.22
  • 73.00
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
81.96
  • 81.96
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
81.13
  • 81.13
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.51e3
  • 6.51e3
78.19
  • 78.19
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
77.79
  • 77.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.15e3
  • 7.15e3
76.08
  • 76.08
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.92e3
  • 8.92e3
  • 1.80e4
70.13
  • 70.13
  • 39.79
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.01e4
  • 1.01e4
  • 1.02e4
  • 1.05e4
  • 1.07e4
  • 1.21e4
  • 1.35e4
  • 1.36e4
  • 1.36e4
  • 1.38e4
  • 1.68e4
66.15
  • 66.15
  • 65.92
  • 64.86
  • 64.31
  • 59.58
  • 54.81
  • 54.43
  • 54.29
  • 53.89
  • 43.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.84
  • 63.84
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.30
  • 61.30
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
58.99
  • 58.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
57.92
  • 57.92
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
  • 1.53e4
56.91
  • 56.91
  • 48.87
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.30e4
  • 1.30e4
  • 1.52e4
  • 1.54e4
56.37
  • 56.37
  • 48.96
  • 48.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.23
  • 54.23
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.70
  • 52.70
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.42e4
  • 1.42e4
52.44
  • 52.44
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.50e4
  • 1.50e4
  • 1.59e4
49.82
  • 49.82
  • 46.77
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.66
  • 44.66
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.35
  • 43.35
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.72e4
  • 1.72e4
42.39
  • 42.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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