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D. rerio Gene: fscn2b - ENSDARG00000074396 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074396
Namefscn2b
Descriptionfascin actin-bundling protein 2b, retinal [Source:ZFIN;Acc:ZDB-GENE-040426-1740]
OrganismDanio rerio (zebrafish)
Synonym(s)fscn1l, fscn2, zgc:73272
Orthologs(s)22 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.21e3
  • 4.21e3
  • 5.48e3
  • 1.20e4
  • 1.69e4
85.90
  • 85.90
  • 81.66
  • 59.98
  • 43.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000036Larval:Day 4
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.33e3
75.00
  • 75.00
  • 69.99
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
1.12e4
  • 1.12e4
  • 1.15e4
  • 1.30e4
  • 1.35e4
  • 1.42e4
  • 1.49e4
62.48
  • 62.48
  • 61.34
  • 56.49
  • 54.96
  • 52.35
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.12e4
  • 1.12e4
  • 1.34e4
  • 1.36e4
  • 1.49e4
  • 1.55e4
  • 1.78e4
  • 1.81e4
62.36
  • 62.36
  • 55.03
  • 54.33
  • 50.06
  • 48.19
  • 40.54
  • 39.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
60.50
  • 60.50
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.38e4
  • 1.38e4
  • 1.75e4
  • 1.80e4
53.66
  • 53.66
  • 41.43
  • 39.77
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000678hair cell anterior macula (Danio)
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.71e4
  • 1.71e4
  • 1.75e4
42.58
  • 42.58
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.21
  • 42.21
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.19
  • 41.19
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.24
  • 32.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000074396.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000074396.

Cross-references

EnsemblENSDARG00000074396 (fscn2b)
ZFINZDB-GENE-040426-1740 (fscn2b)
EMBLCR932362
Uniprot/SPTREMBLF1QGR3, F1QGR3_DANRE

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