Gene: chd9 - ENSDARG00000074498 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000074498
Name	chd9
Description	chromodomain helicase DNA binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-030131-497]
Organism	Danio rerio (zebrafish)
Synonym(s)	fb08b06, fb34c12, wu:fb08b06, wu:fb34c12
Orthologs(s)	15 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.92e3 1.92e3	93.56 93.56	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	3.62e3 3.62e3 6.38e3 7.27e3 9.74e3 1.21e4	87.89 87.89 78.64 75.67 67.38 59.58	AEIR AEIR AEIR AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	4.69e3 4.69e3	84.29 84.29	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	4.84e3 4.84e3	83.80 83.80	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	5.96e3 5.96e3	80.05 80.05	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	6.02e3 6.02e3	79.86 79.86	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	6.19e3 6.19e3 6.52e3	79.28 79.28 78.18	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	6.61e3 6.61e3	77.88 77.88	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	6.66e3 6.66e3 8.57e3	77.71 77.71 71.30	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	6.81e3 6.81e3	77.21 77.21	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	7.36e3 7.36e3	75.36 75.36	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.49e3 7.49e3	74.91 74.91	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	7.60e3 7.60e3	74.57 74.57	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.73e3 7.73e3	74.12 74.12	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	8.93e3 8.93e3 8.95e3	70.10 70.10 70.02	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	9.13e3 9.13e3	69.42 69.42	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	9.46e3 9.46e3	68.34 68.34	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.05e4 1.05e4	64.77 64.77	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.13e4 1.13e4	62.16 62.16	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.20e4 1.20e4	59.74 59.74	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.27e4 1.27e4	57.62 57.62	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.34e4 1.34e4	55.22 55.22	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000015Blastula:Dome	1.45e4 1.45e4	51.48 51.48	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.72e4 1.72e4	42.38 42.38	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	15 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	15 genes ENSG00000177200 CHD9 ENSMUSG00000056608 Chd9 ENSPTRG00000008113 CHD9 ENSGGOG00000014816 CHD9 ENSMMUG00000016310 CHD9 ENSRNOG00000049302 Chd9 ENSBTAG00000002287 CHD9 ENSECAG00000011505 CHD9 ENSOCUG00000001016 CHD9 ENSCAFG00000009699 CHD9 ENSEEUG00000014515 CHD9 ENSOANG00000013401 CHD9 ENSGALG00000003719 CHD9 ENSACAG00000016150 CHD9 ENSXETG00000000349 chd9	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000074498.

Cross-references

Ensembl	ENSDARG00000074498 (chd9)
ZFIN	ZDB-GENE-030131-497 (chd9)
Uniprot/SPTREMBL	E7F7W5, E7F7W5_DANRE