Gene: rin2 - ENSDARG00000074589 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000074589
Name	rin2
Description	Ras and Rab interactor 2 [Source:ZFIN;Acc:ZDB-GENE-090312-194]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-187a12.6
Orthologs(s)	17 orthologs
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	3.10e3 3.10e3	89.63 89.63	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	3.14e3 3.14e3	89.50 89.50	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	3.44e3 3.44e3	88.47 88.47	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	4.13e3 4.13e3 1.29e4	86.19 86.19 56.93	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	4.44e3 4.44e3	85.13 85.13	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	4.87e3 4.87e3 6.13e3	83.70 83.70 79.48	AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	5.78e3 5.78e3	80.66 80.66	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	6.30e3 6.30e3	78.90 78.90	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	7.69e3 7.69e3	74.26 74.26	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.82e3 7.82e3	73.81 73.81	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	8.02e3 8.02e3 9.72e3	73.14 73.14 67.47	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	8.31e3 8.31e3	72.19 72.19	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.54e3 8.54e3	71.42 71.42	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	9.15e3 9.15e3	69.36 69.36	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	9.61e3 9.61e3 1.30e4	67.82 67.82 56.38	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5	1.08e4 1.08e4 1.08e4 1.09e4 1.12e4 1.20e4	63.86 63.86 63.80 63.46 62.55 59.81	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.15e4 1.15e4	61.51 61.51	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.16e4 1.16e4	61.15 61.15	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000015Blastula:Dome	1.21e4 1.21e4	59.44 59.44	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.31e4 1.31e4	56.20 56.20	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.47e4 1.47e4	50.69 50.69	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.51e4 1.51e4	49.46 49.46	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.57e4 1.57e4	47.43 47.43	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.95e4 1.95e4	34.63 34.63	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000132669 RIN2 ENSMUSG00000001768 Rin2 ENSPTRG00000013298 RIN2 ENSGGOG00000016772 RIN2 ENSMMUG00000010114 RIN2 ENSRNOG00000010131 Rin2 ENSBTAG00000020382 RIN2 ENSSSCG00000028004 ENSECAG00000015381 RIN2 ENSOCUG00000015450 RIN2 ENSCAFG00000005363 RIN2 ENSFCAG00000014527 RIN2 ENSCPOG00000013179 RIN2 ENSEEUG00000000586 RIN2 ENSGALG00000008457 RIN2 ENSACAG00000005226 RIN2 ENSXETG00000009700 rin2	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000074589.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Vertebrata	1 gene ENSDARG00000077040 RIN2 (1 to many)	Compare expression	[+]
Metazoa	2 genes ENSDARG00000077040 RIN2 (1 to many) ENSDARG00000077618 rin3	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000074589.

Cross-references

Ensembl	ENSDARG00000074589 (rin2)
ZFIN	ZDB-GENE-090312-194 (rin2)
EMBL	BX323884
Uniprot/SPTREMBL	E7F662, E7F662_DANRE