D. rerio Gene: phc3 - ENSDARG00000074604 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074604
Namephc3
Descriptionpolyhomeotic homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-369]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-127k13.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
7.33e3
  • 7.33e3
  • 7.63e3
75.44
  • 75.44
  • 74.45
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.39e3
  • 7.39e3
75.27
  • 75.27
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.58e3
  • 8.58e3
  • 1.50e4
71.29
  • 71.29
  • 49.80
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
9.11e3
  • 9.11e3
69.50
  • 69.50
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.90
  • 65.90
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.34
  • 65.34
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.93
  • 64.93
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.86
  • 63.86
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.40e4
  • 1.40e4
  • 1.64e4
53.26
  • 53.26
  • 45.24
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.54
  • 50.54
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.50e4
  • 1.50e4
  • 1.68e4
  • 1.92e4
  • 2.06e4
  • 2.13e4
49.84
  • 49.84
  • 43.73
  • 35.80
  • 30.90
  • 28.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.07
  • 49.07
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
  • 1.69e4
48.18
  • 48.18
  • 43.31
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.12
  • 48.12
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.78e4
  • 1.78e4
  • 1.87e4
40.23
  • 40.23
  • 37.55
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
34.97
  • 34.97
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.61
  • 33.61
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.98e4
  • 1.98e4
33.57
  • 33.57
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.59
  • 32.59
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.51
  • 23.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000074604 (phc3)
ZFINZDB-GENE-070912-369 (phc3)
EMBLBX511231, BX539306
Uniprot/SPTREMBLB0S6E8, B0S6E8_DANRE, F1QC91, F1QC91_DANRE, F1R479, F1R479_DANRE

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