D. rerio Gene: abca1a - ENSDARG00000074635 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074635
Nameabca1a
DescriptionATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
OrganismDanio rerio (zebrafish)
Synonym(s)abca1, cb939, fa03d03, im:6795541, wu:fa03d03, wu:fj13h01
Orthologs(s)20 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000109gastrula stage
  • UBERON:0000068embryo stage
2.73e3
  • 2.73e3
  • 4.27e3
  • 4.37e3
  • 4.48e3
  • 5.41e3
  • 6.99e3
  • 7.37e3
  • 8.09e3
  • 8.74e3
  • 8.74e3
  • 8.91e3
  • 9.04e3
  • 9.80e3
  • 1.19e4
  • 1.47e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
90.86
  • 90.86
  • 85.71
  • 85.37
  • 85.01
  • 81.90
  • 76.59
  • 75.31
  • 72.90
  • 70.74
  • 70.73
  • 70.16
  • 69.74
  • 67.18
  • 60.09
  • 50.90
  • 50.68
  • 49.99
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.95e3
  • 2.95e3
90.13
  • 90.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.00e3
  • 3.00e3
89.94
  • 89.94
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.29e3
  • 3.29e3
  • 4.64e3
  • 8.18e3
  • 9.15e3
88.99
  • 88.99
  • 84.46
  • 72.62
  • 69.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
  • 4.00e3
88.33
  • 88.33
  • 86.59
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.94e3
  • 3.94e3
  • 4.91e3
86.80
  • 86.80
  • 83.55
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.16e3
  • 4.16e3
86.08
  • 86.08
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.28e3
  • 4.28e3
85.66
  • 85.66
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
4.35e3
  • 4.35e3
  • 5.89e3
  • 6.68e3
  • 7.55e3
  • 7.91e3
  • 9.41e3
  • 9.66e3
  • 1.03e4
  • 1.08e4
  • 1.25e4
85.42
  • 85.42
  • 80.26
  • 77.64
  • 74.73
  • 73.53
  • 68.51
  • 67.65
  • 65.55
  • 63.87
  • 58.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
85.20
  • 85.20
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.53e3
  • 4.53e3
  • 5.14e3
  • 5.55e3
84.84
  • 84.84
  • 82.79
  • 81.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.67e3
  • 4.67e3
84.35
  • 84.35
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.96
  • 82.96
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.44e3
  • 5.44e3
  • 9.59e3
81.79
  • 81.79
  • 67.90
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
78.47
  • 78.47
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.69e3
  • 6.69e3
77.60
  • 77.60
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.24e3
  • 7.24e3
75.75
  • 75.75
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.29e3
  • 7.29e3
75.59
  • 75.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
75.15
  • 75.15
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
75.10
  • 75.10
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.68e3
  • 7.68e3
74.29
  • 74.29
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.04e3
  • 8.04e3
  • 9.25e3
  • 9.67e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
73.07
  • 73.07
  • 69.03
  • 67.63
  • 67.48
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
8.07e3
  • 8.07e3
  • 1.35e4
  • 1.36e4
72.98
  • 72.98
  • 54.73
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
8.45e3
  • 8.45e3
  • 1.06e4
  • 1.17e4
  • 1.24e4
  • 1.32e4
  • 1.58e4
71.71
  • 71.71
  • 64.39
  • 60.91
  • 58.51
  • 55.93
  • 47.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.91e3
  • 8.91e3
  • 1.07e4
70.15
  • 70.15
  • 64.03
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.65e3
  • 9.65e3
67.68
  • 67.68
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.10e4
  • 1.10e4
  • 1.14e4
  • 1.14e4
  • 1.38e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
63.14
  • 63.14
  • 61.75
  • 61.75
  • 53.83
  • 53.55
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.16e4
  • 1.16e4
61.05
  • 61.05
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.86
  • 49.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000074635.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000074635.

Cross-references

EnsemblENSDARG00000074635 (abca1a)
ZFINZDB-GENE-031006-12 (abca1a)
EMBLBX004781
Uniprot/SPTREMBLB8A446, B8A446_DANRE

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