D. rerio Gene: SPOCK1 - ENSDARG00000074644 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074644
NameSPOCK1
Descriptionsparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 [Source:HGNC Symbol;Acc:HGNC:11251]
OrganismDanio rerio (zebrafish)
Synonym(s)spock, testican-1, tic1
Orthologs(s)15 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.83e3
  • 5.83e3
80.47
  • 80.47
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
8.52e3
  • 8.52e3
  • 1.84e4
  • 1.92e4
  • 1.97e4
  • 2.04e4
71.49
  • 71.49
  • 38.34
  • 35.69
  • 34.16
  • 31.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.22
  • 61.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.03
  • 56.03
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.39e4
  • 1.39e4
  • 1.41e4
53.57
  • 53.57
  • 52.83
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.49e4
  • 1.49e4
50.16
  • 50.16
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
50.13
  • 50.13
  • 50.05
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.01
  • 50.01
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.88
  • 48.88
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.54e4
  • 1.54e4
48.38
  • 48.38
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.72e4
  • 1.72e4
  • 2.14e4
42.30
  • 42.30
  • 28.20
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.81e4
  • 1.81e4
39.37
  • 39.37
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.37
  • 34.37
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.78
  • 32.78
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.62
  • 23.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.51e4
  • 2.51e4
16.06
  • 16.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000074644.

Cross-references

EnsemblENSDARG00000074644 (SPOCK1)
HGNCHGNC:11251 (SPOCK1)
EMBLCABZ01068696, CABZ01068697, CABZ01068698, CABZ01068699, CABZ01068700, CABZ01068701, CABZ01068702, CABZ01068703, CABZ01068704, CABZ01068705
Uniprot/SPTREMBLA0A0G2KM32, A0A0G2KM32_DANRE, A0A0G2L032, A0A0G2L032_DANRE, E7F9M2, E7F9M2_DANRE

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