D. rerio Gene: rims1a - ENSDARG00000074680 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074680
Namerims1a
Descriptionregulating synaptic membrane exocytosis 1a [Source:ZFIN;Acc:ZDB-GENE-090312-135]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-14m15.1
Orthologs(s)1 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.36e3
  • 1.36e3
95.44
  • 95.44
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.84e3
  • 1.84e3
93.85
  • 93.85
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
3.20e3
  • 3.20e3
  • 5.70e3
  • 6.50e3
  • 1.31e4
  • 1.77e4
89.29
  • 89.29
  • 80.93
  • 78.24
  • 56.11
  • 40.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.52e3
  • 3.52e3
  • 5.05e3
88.21
  • 88.21
  • 83.09
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.97e3
  • 6.97e3
76.68
  • 76.68
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.06e3
  • 7.06e3
  • 7.63e3
76.36
  • 76.36
  • 74.44
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
8.33e3
  • 8.33e3
  • 8.55e3
72.13
  • 72.13
  • 71.37
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.07e3
  • 9.07e3
69.64
  • 69.64
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.10e3
  • 9.10e3
69.54
  • 69.54
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.59e3
  • 9.59e3
67.88
  • 67.88
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.26
  • 63.26
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.81
  • 61.81
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.15e4
  • 1.15e4
  • 1.27e4
61.63
  • 61.63
  • 57.32
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.93
  • 59.93
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.24e4
  • 1.24e4
  • 1.70e4
58.50
  • 58.50
  • 43.04
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.18
  • 56.18
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.70
  • 55.70
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.19
  • 52.19
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.14
  • 48.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.48
  • 40.48
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.24
  • 37.24
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.72
  • 33.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000074680.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000074680.

Cross-references

EnsemblENSDARG00000074680 (rims1a)
ZFINZDB-GENE-090312-135 (rims1a)
EMBLCR354543, CR356236
Uniprot/SPTREMBLE9QHR1, E9QHR1_DANRE, F1QVX7, F1QVX7_DANRE, F1R2U5, F1R2U5_DANRE, F1R7Z9, F1R7Z9_DANRE, F1RCJ3, F1RCJ3_DANRE

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