Gene: ppm1j - ENSDARG00000074690 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000074690
Name	ppm1j
Description	protein phosphatase, Mg2+/Mn2+ dependent, 1J [Source:ZFIN;Acc:ZDB-GENE-091230-9]
Organism	Danio rerio (zebrafish)
Orthologs(s)	7 orthologs
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	4.14e3 4.14e3	86.13 86.13	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	6.96e3 6.96e3	76.69 76.69	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.83e3 7.83e3	73.77 73.77	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.08e4 1.08e4	63.78 63.78	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.10e4 1.10e4	63.33 63.33	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	1.14e4 1.14e4 1.69e4	61.74 61.74 43.58	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.83 60.83	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.77 60.77	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.37e4 1.37e4 1.53e4	54.26 54.26 48.61	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.41e4 1.41e4	52.91 52.91	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.55e4 1.55e4	47.94 47.94	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	1.62e4 1.62e4 1.63e4	45.62 45.62 45.31	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	1.64e4 1.64e4 1.76e4 1.96e4 1.98e4 2.01e4	45.23 45.23 41.19 34.26 33.81 32.69	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.65e4 1.65e4	44.73 44.73	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.68e4 1.68e4	43.66 43.66	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.69e4 1.69e4 1.94e4	43.56 43.56 35.19	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.72e4 1.72e4	42.43 42.43	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.74e4 1.74e4	41.69 41.69	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.77e4 1.77e4	40.78 40.78	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.86e4 1.86e4	37.63 37.63	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.89e4 1.89e4	36.73 36.73	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	7 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	7 genes FBgn0031194 CG17598 WBGene00016580 C42C1.2 FBgn0098271 GF21269 FBgn0137041 GI14288 FBgn0187151 GD15484 FBgn0206490 GJ19346 FBgn0232854 GE15267	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000074690.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	1 gene ENSDARG00000063684 ppm1h	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000074690.

Cross-references

Ensembl	ENSDARG00000074690 (ppm1j)
ZFIN	ZDB-GENE-091230-9 (ppm1j)
EMBL	CU469362
Uniprot/SPTREMBL	X1WCB3, X1WCB3_DANRE